Max Planck Institute for Plant Breeding Research

MPIPZ Scientific Publications since 2002

Journal Article (91)

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Ai, H.; Bellstaedt, J.; Bartusch, K. S.; Eschen-Lippold, L.; Babben, S.; Balcke, G. U.; Tissier, A.; Hause, B.; Andersen, T. G.; Delker, C. et al.; Quint, M.: Auxin-dependent regulation of cell division rates governs root thermomorphogenesis. The EMBO Journal 42 (11), e111926 (2023)

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Andersen, T. G.; Vermeer, J. E. M.: Bacterial gas-lighting of lateral root formation. PNAS 120 (17), e2303919120 (2023)

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Arlt, C.; Wachtmeister, T.; Koehrer, K.; Stich, B.: Affordable, accurate and unbiased RNA sequencing by manual library miniaturization: A case study in barley. Plant Biotechnology Journal 21 (11), pp. 2241 - 2253 (2023)

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Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)

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Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

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Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)

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Bock, D. G.; Liu, J.; Novikova, P. Y.; Rieseberg, L. H.: Long-read sequencing in ecology and evolution: Understanding how complex genetic and epigenetic variants shape biodiversity. Molecular Ecology 32, pp. 1229 - 1235 (2023)

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Brazel, A. J.; Fattorini, R.; McCarthy, J.; Franzen, R.; Rümpler, F.; Coupland, G.; O'Maoiléidigh, D. S.: AGAMOUS mediates timing of guard cell formation during gynoecium development. PLOS Genetics 19 (10), e1011000 (2023)

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Campos Martin, R.; Schmickler, S.; Goel, M.; Schneeberger, K.; Tresch, A.: Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology 192 (2), pp. 821 - 836 (2023)

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Cao, Y.; Kümmel, F.; Logemann, E.; Gebauer, J. M.; Lawson, A. W.; Yu, D.; Uthoff, M.; Keller, B.; Jirschitzka, J.; Baumann, U. et al.; Tsuda, K.; Chai, J.; Schulze-Lefert, P.: Structural polymorphisms within a common powdery mildew effector scaffold as a driver of coevolution with cereal immune receptors. Proceedings of the National Academy of Sciences of the United States of America 120 (32), e2307604120 (2023)

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Castro, N.; Mata-Sucre, Y.; Carvalho-Sobrinho, J.; Marques, A.; de Queiroz, R. T.; Souza, G.: Genomic stability in Cenostigma Tul., (Caesalpinioideae, Fabaceae): causes and consequences. Botanical Journal of the Linnean Society, boad043 (2023)

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Cerise, M.; da Silveira Falavigna, V.; Rodriguez Maroto, G.; Signol, A.; Severing, E.; Gao, H.; van Driel, A.; Vincent, C.; Wilkens, S.; Iacobini, F. et al.; Formosa-Jordan, P.; Pajoro, A.; Coupland, G.: Two modes of gene regulation by TFL1 mediate its dual function in flowering time and shoot determinacy of Arabidopsis. Development 150 (23), dev202089 (2023)

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Chai, J.; Song, W.; Parker, J. E.: New Biochemical Principles for NLR Immunity in Plants. Molecular Plant-Microbe Interactions 36 (8), pp. 468 - 475 (2023)

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Costa, L.; Marques, A.; Buddenhagen, C. E.; Pedrosa-Harand, A.; Souza, G.: Investigating the diversification of holocentromeric satellite DNA Tyba in Rhynchospora (Cyperaceae). Annals of Botany 131 (5), pp. 813 - 825 (2023)

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Crean, E. E.; Bilstein-Schloemer, M.; Maekawa, T.; Schulze-Lefert, P.; Saur, I. M. L.: A dominant-negative avirulence effector 1 of the barley powdery mildew fungus provides mechanistic insight to barley MLA immune receptor activation. Journal of Experimental Botany 74 (18), pp. 5854 - 5869 (2023)

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Cullen, E.; Wang, Q.; Glover, B. J.: How do you build a nectar spur? A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus. Frontiers in Plant Science 14, 1190373 (2023)

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de Jager, N.; Shukla, V.; Koprivova, A.; Lyčka, M.; Bilalli, L.; You, Y.; Zeier, J.; Kopriva, S.; Ristova, D.: Traits linked to natural variation of sulfur content in A. thaliana leaf. Journal of Experimental Botany, erad401 (2023)

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Elfarargi, A. F.; Gilbault, E.; Doering, N.; Neto, C.; Fulgione, A.; Weber, A. P. M.; Loudet, O.; Hancock, A. M.: Genomic Basis of Adaptation to a Novel Precipitation Regime. Molecular Biology and Evolution 40 (3), msad031 (2023)

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Escobar-Nino, A.; Harzen, A.; Stolze, S. C.; Nakagami, H.; Fernandez-Acero, F. J.: The Adaptation of Botrytis cinerea Extracellular Vesicles Proteome to Surrounding Conditions: Revealing New Tools for Its Infection Process. Journal of Fungi 9 (9), 872 (2023)

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Escudero, M.; Marques, A.; Lucek, K.; Hipp, A. L. L.: Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage. Molecular Ecology (2023)

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Feehan, J. M.; Wang, J.; Sun, X.; Choi, J.; Ahn, H. K.; Ngou, B. P.; Parker, J. E.; Jones, J. D.: Oligomerization of a plant helper NLR requires cell-surface and intracellular immune receptor activation. Proceedings of the National Academy of Sciences of the United States of America 120 (11), e2210406120 (2023)

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Foerderer, A.; Chai, J.: Die another day: phytosulfokine at the molecular trade-off between growth and defense in plants. The EMBO Journal 42 (6), e113540 (2023)

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Formosa-Jordan, P.; Holloway, D. M.; Diambra, L.: Editorial: Pattern formation in biology. Frontiers in Physics 11, 1161890 (2023)

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Frommer, B.; Muellner, S.; Holtgraewe, D.; Viehoever, P.; Huettel, B.; Toepfer, R.; Weisshaar, B.; Zyprian, E.: Phased grapevine genome sequence of an Rpv12 carrier for biotechnological exploration of resistance to Plasmopara viticola. Frontiers in Plant Science 14, 1180982 (2023)

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Gebhardt, C.: A physical map of traits of agronomic importance based on potato and tomato genome sequences. Frontiers in Genetics 14, 1197206 (2023)

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Getzke, F.; Hassani, M. A.; Crüsemann, M.; Malisic, M.; Zhang, P.; Ishigaki, Y.; Böhringer, N.; Jiménez Fernández, A.; Wang, L.; Ordon, J. et al.; Ma, K.-W.; Thiergart, T.; Harbort, C. J.; Wesseler, H.; Miyauchi, S.; Garrido-Oter, R.; Shirasu, K.; Schäberle, T.F.; Hacquard, S.; Schulze-Lefert, P.: Co-functioning of bacterial exometabolites drives root microbiota establishment. Proceedings of the National Academy of Sciences of the United States of America 120 (15), e2221508120 (2023)

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Giaume, F.; Bono, G. A.; Martignago, D.; Miao, Y.; Vicentini, G.; Toriba, T.; Wang, R.; Kong, D.; Cerise, M.; Chirivi, D. et al.; Biancucci, M.; Khahani, B.; Morandini, P.; Tameling, W.; Martinotti, M.; Goretti, D.; Coupland, G.; Kater, M.; Brambilla, V.; Miki, D.; Kyozuka, J.; Fornara, F.: Two florigens and a florigen-like protein form a triple regulatory module at the shoot apical meristem to promote reproductive transitions in rice. Nature Plants 9 (4), pp. 525 - 534 (2023)

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Girard, C.; Zwicker, D.; Mercier, R.: The regulation of meiotic crossover distribution: a coarse solution to a century-old mystery? Biochemical Society Transactions 28 (51), pp. 1179 - 1190 (2023)

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Gombos, S.; Miras, M.; Howe, V.; Xi, L.; Pottier, M.; Kazemein Jasemi, N. S.; Schladt, M.; Ejike, J. O.; Neumann, U.; Haensch, S. et al.; Kuttig, F.; Zhang, Z.; Dickmanns, M.; Xu, P.; Stefan, T.; Baumeister, W.; Frommer, W. B.; Simon, R.; Schulze, W.X.: A high-confidence Physcomitrium patens plasmodesmata proteome by iterative scoring and validation reveals diversification of cell wall proteins during evolution. New Phytologist 238, pp. 637 - 653 (2023)

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Griebel, T.; Lapin, D.; Locci, F.; Kracher, B.; Bautor, J.; Concia, L.; Benhamed, M.; Parker, J. E.: Arabidopsis Topless-related 1 mitigates physiological damage and growth penalties of induced immunity. New Phytologist 239 (4), pp. 1404 - 1419 (2023)

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Guerreiro, R.; Bonthala, V. S.; Schlueter, U.; Hoang, N. V.; Triesch, S.; Schranz, M. E.; Weber, A. P. M.; Stich, B.: A genomic panel for studying C3-C4 intermediate photosynthesis in the Brassiceae tribe. Plant, Cell and Environment (2023)

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Hartwig, T.; Banf, M.; Prietsch, G. P.; Zhu, J.-Y.; Mora-Ramirez, I.; Schippers, J. H. M.; Snodgrass, S. J.; Seetharam, A. S.; Huettel, B.; Kolkman, J. M. et al.; Yang, J.; Engelhorn, J.; Wang, Z.-Y.: Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize. Genome Biology and Evolution 24 (1), 108 (2023)

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Hu, Z.; Chai, J.: Assembly and Architecture of NLR Resistosomes and Inflammasomes. Annual Review of Biophysics 52, pp. 207 - 228 (2023)

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Huang, S.; Jia, A.; Ma, S.; Sun, Y.; Chang, X.; Han, Z.; Chai, J.: NLR signaling in plants: from resistosomes to second messengers. Trends in biochemical sciences 48 (9), pp. 776 - 787 (2023)

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Ji, C.; Song, F.; He, C.; An, J.; Huang, S.; Yu, H.; Lu, H.; Xiao, S.; Bucher, M.; Pan, Z.: Integrated miRNA-mRNA analysis reveals candidate miRNA family regulating arbuscular mycorrhizal symbiosis of Poncirus trifoliata. Plant, Cell and Environment 46 (6), pp. 1805 - 1821 (2023)

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Jia, A.; Huang, S.; Ma, S.; Chang, X.; Han, Z.; Chai, J.: TIR-catalyzed nucleotide signaling molecules in plant defense. Current Opinion in Plant Biology 73, 102334 (2023)

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Johanndrees, O.; Baggs, E. L.; Uhlmann, C.; Locci, F.; Laessle, H.; Melkonian, K.; Käufer, K.; Dongus, J. A.; Nakagami, H.; Krasileva, K. V. et al.; Parker, J. E.; Lapin, D.: Variation in plant Toll/Interleukin-1 receptor domain protein dependence on ENHANCED DISEASE SUSCEPTIBILITY 1. Plant Physiology 191, kiac480, pp. 626 - 642 (2023)

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Johnston-Monje, D.; Vergara, L. I.; Lopez-Mejia, J.; White, J. F.: Plant microbiomes as contributors to agricultural terroir. Frontiers in Agronomy 5, 1216520 (2023)

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Kolesnikova, U. K.; Scott, A. D.; Van de Velde, J. D.; Burns, R.; Tikhomirov, N. P.; Pfordt, U.; Clarke, A. C.; Yant, L.; Seregin, A. P.; Vekemans, X. et al.; Laurent, S.; Novikova, P. Y.: Transition to Self-compatibility Associated With Dominant S-allele in a Diploid Siberian Progenitor of Allotetraploid Arabidopsis kamchatica Revealed by Arabidopsis lyrata Genomes. Molecular Biology and Evolution 40 (7), msad122 (2023)

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Kuo, Y.-T.; Souza Câmara, A.; Schubert, V.; Neumann, P.; Macas, J.; Melzer, M.; Chen, J.; Fuchs, J.; Abel, S.; Klocke, E. et al.; Huettel, B.; Himmelbach, A.; Demidov, D.; Dunemann, F.; Mascher, M.; Ishii, T.; Marques, A.; Houben, A.: Holocentromeres can consist of merely a few megabase-sized satellite arrays. Nature Communications 14, 3502 (2023)

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Kusch, S.; Qian, J.; Loos, A.; Kümmel, F.; Spanu, P. D.; Panstruga, R.: Long-term and rapid evolution in powdery mildew fungi. Molecular Ecology (2023)

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Lian, Q.; Maestroni, L.; Gaudin, M.; Llorente, B.; Mercier, R.: Meiotic recombination is confirmed to be unusually high in the fission yeast Schizosaccharomyces pombe. iScience 26 (9), 107614 (2023)

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Llamas, E.; Koyuncu, S.; Lee, H. J.; Wehrmann, M.; Gutierrez-Garcia, R.; Dunken, N.; Charura, N.; Torres-Montilla, S.; Schlimgen, E.; Mandel, A. M. et al.; Theile, E. B.; Grossbach, J.; Wagle, P.; Lackmann, J.-W.; Schermer, B.; Benzing, T.; Beyer, A.; Pulido, P.; Rodriguez-Concepcion, M.; Zuccaro, A.; Vilchez, D.: In planta expression of human polyQ-expanded huntingtin fragment reveals mechanisms to prevent disease-related protein aggregation. Nature aging 3, pp. 1345 - 1357 (2023)

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Locci, F.; Wang, J.; Parker, J. E.: TIR-domain enzymatic activities at the heart of plant immunity. Current Opinion in Plant Biology 74, 102373 (2023)

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Mahlandt, A.; Singh, D. K.; Mercier, R.: Engineering apomixis in crops. Theoretical and Applied Genetics 136 (6), 131 (2023)

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Marques, D. N.; Mason, C.; Stolze, S. C.; Harzen, A.; Nakagami, H.; Skirycz, A.; Piotto, F. A.; Antunes Azevedo, R.: Grafting systems for plant cadmium research: Insights for basic plant physiology and applied mitigation. Science of the Total Environment 892, 164610 (2023)

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Martignago, D.; da Silveira Falavigna, V.; Lombardi, A.; Gao, H.; Kurkowski, P. K.; Galbiati, M.; Tonelli, C.; Coupland, G.; Conti, L.: The bZIP transcription factor AREB3 mediates FT signalling and floral transition at the Arabidopsis shoot apical meristem. PLoS Genetics 19 (5), e1010766 (2023)

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Mata-Sucre, Y.; Matzenauer, W.; Castro, N.; Huettel, B.; Pedrosa-Harand, A.; Marques, A.; Souza, G.: Repeat-based phylogenomics shed light on unclear relationships in the monocentric genus Juncus L. (Juncaceae). Molecular Phylogenetics and Evolution 189, 107930 (2023)

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Mesny, F.; Hacquard, S.; Thomma, B. P. H. J.: Co-evolution within the plant holobiont drives host performance. EMBO Reports 24 (9), e57455 (2023)

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Michailidis, M.; Bazakos, C.; Kollaros, M.; Adamakis, I.-D. S.; Ganopoulos, I.; Molassiotis, A.; Tanou, G.: Boron stimulates fruit formation and reprograms developmental metabolism in sweet cherry. Physiologia Plantarum 175 (3), e13946 (2023)

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