Scientific Publications since 2002

Max Planck Institute for Plant Breeding Research

Journal Article (91)

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Mueller, Y.; Patwari, P.; Stoecker, T.; Zeisler-Diehl, V.; Steiner, U.; Campoli, C.; Grewe, L.; Kuczkowska, M.; Dierig, M. M.; Jose, S. et al.; Hetherington, A. M.; Acosta, I. F.; Schoof, H.; Schreiber, L.; Doermann, P.: Isolation and characterization of the gene HvFAR1 encoding acyl-CoA reductase from the cer-za.227 mutant of barley (Hordeum vulgare) and analysis of the cuticular barrier functions. New Phytologist 239 (5), pp. 1903 - 1918 (2023)

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Myers, Z. A.; Wootan, C. M.; Liang, Z.; Zhou, P.; Engelhorn, J.; Hartwig, T.; Nathan, S. M.: Conserved and variable heat stress responses of the Heat Shock Factor transcription factor family in maize and Setaria viridis. Plant Direct 7 (4), e489 (2023)

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Neto, C.; Hancock, A.: Genetic Architecture of Flowering Time Differs Between Populations With Contrasting Demographic and Selective Histories. Molecular Biology and Evolution 40 (8), msad185 (2023)

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Nishikawa, M.; Katsu, K.; Koinuma, H.; Hashimoto, M.; Neriya, Y.; Matsuyama, J.; Yamamoto, T.; Suzuki, M.; Matsumoto, O.; Matsui, H. et al.; Nakagami, H.; Maejima, K.; Namba, S.; Yamaji, Y.: Interaction of EXA1 and eIF4E Family Members Facilitates Potexvirus Infection in Arabidopsis thaliana. Journal of Virology (2023)

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Ordon, J.; Kiel, N.; Becker, D.; Kretschmer, C.; Schulze-Lefert, P.; Stuttmann, J.: Targeted gene deletion with SpCas9 and multiple guide RNAs in Arabidopsis thaliana: four are better than two. Plant Methods 19 (1), 30 (2023)

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Peckham, M.; Neumann, U.; Culley, S.: Introduction to women in microscopy: Volume 1. Special Issue 291 (1), pp. 3 - 4 (2023)

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Peng, H.; Feng, H.; Zhang, T.; Wang, Q.: Plant defense mechanisms in plant-pathogen interactions. Frontiers in Plant Science 14, 1292294 (2023)

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Prautsch, J.; Erickson, J. L.; Oezyuerek, S.; Gormanns, R.; Franke, L.; Lu, Y.; Marx, J.; Niemeyer, F.; Parker, J. E.; Stuttmann, J. et al.; Schattat, M. H.: Effector XopQ-induced stromule formation in Nicotiana benthamiana depends on ETI signaling components ADR1 and NRG1. Plant Physiology 191, pp. 161 - 176 (2023)

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Rahimzadeh Karvansara, P.; Kelly, C.; Krone, R.; Zenzen, I.; Ristova, D.; Silz, E.; Jobe, T.O.; Kopriva, S.: Unique features of regulation of sulfate assimilation in monocots. Journal of Experimental Botany 74 (1308), 320, pp. 308 (2023)

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Rawat, A. A.; Hartmann, M.; Harzen, A.; Lugan, R.; Stolze, S. C.; Forzani, C.; Abts, L.; Reissenweber, S.; Rayapuram, N.; Nakagami, H. et al.; Zeier, J.; Hirt, H.: OXIDATIVE SIGNAL-INDUCIBLE1 induces immunity by coordinating N-hydroxypipecolic acid, salicylic acid, and camalexin synthesis. New Phytologist 237, pp. 1285 - 1301 (2023)

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Sarnowska, E.; Kubala, S.; Cwiek, P.; Sacharowski, S.; Oksinska, P.; Steciuk, J.; Zaborowska, M.; Szurmak, J. M.; Dubianski, R.; Maassen, A. et al.; Stachowiak, M.; Huettel, B.; Ciesla, M.; Nowicka, K.; Rolicka, A. T.; Alseekh, S.; Bucior, E.; Franzen, R.; Skoneczna, A.; Domagalska, M. A.; Amar, S.; Hajirezaei, M.-R.; Siedlecki, J. A.; Fernie, A. R.; Davis, S. J.; Sarnowski, T. J.: A non-canonical function of Arabidopsis ERECTA proteins and a role of the SWI3B subunit of the SWI/SNF chromatin remodeling complex in gibberellin signaling. The Plant Journal 115 (3), pp. 788 - 802 (2023)

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Saul, F.; Scharmann, M.; Wakatake, T.; Rajaraman, S.; Marques, A.; Freund, M.; Bringmann, G.; Channon, L.; Becker, D.; Carroll, E. et al.; Low, Y. W.; Lindqvist, C.; Gilbert, K. J.; Renner, T.; Masuda, S.; Richter, M.; Vogg, G.; Shirasu, K.; Michael, T. P.; Hedrich, R.; Albert, V. A.; Fukushima, K.: Subgenome dominance shapes novel gene evolution in the decaploid pitcher plant Nepenthes gracilis. Nature Plants 9 (12), pp. 2000 - 2015 (2023)

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Seah, B.; Singh, M.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.A.; Sugiura, M.; Harumoto, T. et al.; Swart, E.C.: MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213985120 (2023)

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Shi, W.; Stolze, S. C.; Nakagami, H.; Misas Villamil, J. C.; Saur, I. M. L.; Doehlemann, G.: Combination of in vivo proximity labeling and co-immunoprecipitation identifies the host target network of a tumor-inducing effector in the fungal maize pathogen Ustilago maydis. Journal of Experimental Botany 74 (15), pp. 4736 - 4750 (2023)

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Sidhu, C.; Kirstein, I. V.; Meunier, C. L.; Rick, J.; Fofonova, V.; Wiltshire, K. H.; Steinke, N.; Vidal-Melgosa, S.; Hehemann, J.-H.; Huettel, B. et al.; Schweder, T.; Fuchs, B. M.; Amann, R. I.; Teeling, H.: Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom. Microbiome 11 (1), 77 (2023)

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Singh, D. K.; Gamboa, R. S.; Singh, A. K.; Walkemeier, B.; Van Leene, J.; De Jaeger, G.; Siddiqi, I.; Guerois, R.; Crismani, W.; Mercier, R.: The FANCC-FANCE-FANCF complex is evolutionarily conserved and regulates meiotic recombination. Nucleic Acids Research 51 (3), pp. 2516 - 2528 (2023)

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Singh, D. K.; Lian, Q.; Durand, S.; Fernandes, J. B.; Chambon, A.; Hurel, A.; Walkemeier, B.; Solier, V.; Kumar, R.; Mercier, R.: HEIP1 is required for efficient meiotic crossover implementation and is conserved from plants to humans. Proceedings of the National Academy of Sciences of the United States of America 120 (23), e2221746120 (2023)

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Singh, M.; Seah, B.; Emmerich, C.; Singh, A.; Woehle, C.; Huettel, B.; Byerly, A.; Stover, N.A.; Sugiura, M.; Harumoto, T. et al.; Swart, E. C.: Origins of genome-editing excisases as illuminated by the somatic genome of the ciliate Blepharisma. Proceedings of the National Academy of Sciences of the United States of America 120 (4), e2213887120 (2023)

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Skeffington, A.; Fischer, A.; Sviben, S.; Brzezinka, M.; Górka, M.; Bertinetti, L.; Woehle, C.; Huettel, M.; Graf, A.; Scheffel, A.: A joint proteomic and genomic investigation provides insights into the mechanism of calcification in coccolithophores. Nature Communications 14, 3749 (2023)

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Srivastava, R.; Bazakos, C.; Tsachaki, M.; Zanko, D.; Kalantidis, K.; Tsiantis, M.; Laurent, S.: Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece. Genome Biology and Evolution 15 (12), evad226 (2023)

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Steiner, T.; Zachary, M.; Bauer, S.; Mueller, M. J.; Krischke, M.; Radziej, S.; Klepsch, M.; Huettel, B.; Eisenreich, W.; Rudel, T. et al.; Beier, D.: Central Role of Sibling Small RNAs NgncR_162 and NgncR_163 in Main Metabolic Pathways of Neisseria gonorrhoeae. mBio 14 (1) (2023)

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Strütt, S.; Sellinger, T.; Glémin, S.; Tellier, A.; Laurent, S.: Joint inference of evolutionary transitions to self-fertilization and demographic history using whole-genome sequences. eLife 12, e82384 (2023)

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Thangavel, G.; Hofstatter, P. G.; Mercier, R.; Marques, A.: Tracing the evolution of the plant meiotic molecular machinery. Plant Reproduction (2023)

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Tourvas, N.; Ganopoulos, I.; Koubouris, G.; Kostelenos, G.; Manthos, I.; Bazakos, C.; Stournaras, V.; Molassiotis, A.; Aravanopoulos, F.: Wild and cultivated olive tree genetic diversity in Greece: a diverse resource in danger of erosion. Frontiers in Genetics 14, 1298565 (2023)

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Vannier, N.; Mesny, F.; Getzke, F.; Chesneau, G.; Dethier, L.; Ordon, J.; Thiergart, T.; Hacquard, S.: Genome-resolved metatranscriptomics 1 reveals conserved root colonization determinants in a synthetic microbiota. Nature Communications 14, 8274 (2023)

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Vrielynck, N.; Peuch, M.; Durand, S.; Lian, Q.; Chambon, A.; Hurel, A.; Guerin, J.; Guerois, R.; Mercier, R.; Grelon, M. et al.; Mezard, C.: SCEP1 and SCEP2 are two new components of the synaptonemal complex central element. Nature Plants 9, pp. 2016 - 2030 (2023)

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Wang, J.; Song, W.; Chai, J.: Structure, biochemical function, and signaling mechanism of plant NLRs. Molecular Plant 16 (1), pp. 75 - 95 (2023)

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Wang, T.; Wang, H.; Lian, Q.; Jia, Q.; You, C.; Copenhaver, G. P.; Wang, C.; Wang, Y.: HEI10 is subject to phase separation and mediates RPA1a degradation during meiotic interference- sensitive crossover formation. PNAS 120 (52), e2310542120 (2023)

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Wang, Y.; Underwood, C. J.: The Apomixis. Current Biology 33 (8) (2023)

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Wanke, A.; van Boerdonk, S.; Mahdi, L. K.; Wawra, S.; Neidert, M.; Chandrasekar, B.; Saake, P.; Saur, I. M. L.; Derbyshire, P.; Holton, N. et al.; Menke, F. L. H.; Brands, M.; Pauly, M.; Acosta, I.; Zipfel, C.; Zuccaro, A.: A GH81-type β-glucan-binding protein enhances colonization by mutualistic fungi in barley. Current Biology 33 (23), pp. 5071 - 5084.e7 (2023)

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Weisweiler, M.; Stich, B.: Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing. Genomics 115 (2), 110568 (2023)

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Wlodzimierz, P.; Rabanal, F. A.; Burns, R.; Naish, M.; Primetis, E.; Scott, A.; Mandáková, T.; Gorringe, N.; Tock, A.; Holland, D. et al.; Fritschi, K.; Habring, A.; Lanz, C.; Patel, C.; Schlegel, T.; Collenberg, M.; Mielke, M.; Nordborg, M.; Roux, F.; Shirsekar, G.; Alonso-Blanco, C.; Lysak, M.; Novikova, P. Y.; Bousios, A.; Weigel, D.; Henderson, I.: Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature 618 (7965), pp. 557 - 565 (2023)

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Wu, P.Y.; Stich, B.; Renner, J.; Muders, K.; Prigge, V.; van Inghelandt, D.: Optimal implementation of genomic selection in clone breeding programs-Exemplified in potato: I. Effect of selection strategy, implementation stage, and selection intensity on short-term genetic gain. The Plant Genome 16 (2), e20327 (2023)

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Wu, Y.; Sun, Y.; Richet, E.; Han, Z.; Chai, J.: Structural basis for negative regulation of the Escherichia coli maltose system. Nature Communications 14 (1), 4925 (2023)

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Wunder, J.; Fulgione, A.; Toraeng, P.; Woetzel, S.; Herzog, M.; Obeso, J. R.; Kourmpetis, Y.; van Ham, R.; Odong, T.; Bink, M. et al.; Kemi, U.; Agren, J.; Coupland, G.: Adaptation of perennial flowering phenology across the European range of Arabis alpina. Proceedings of the Royal Society of London Series B 290 (2011), 20231401 (2023)

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Xu, L.; Wang, J.; Xiao, Y.; Han, Z.; Chai, J.: Structural insight into chitin perception by chitin elicitor receptor kinase 1 of Oryza sativa. Journal of Integrative Plant Biology 65 (1), pp. 235 - 248 (2023)

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Xu, M.-R.-X.; Liao, Z.-Y.; Brock, J. R.; Du, K.; Li, G.-Y.; Chen, Z.-Q.; Wang, Y.-H.; Gao, Z.-N.; Agarwal, G.; Wei, K. H.-C. et al.; Shao, F.; Pang, S.; Platts, A. E.; Van de Velde, J. D.; Lin, H.-M.; Teresi, S. J.; Bird, K.; Niederhuth, C. E.; Xu, J.-G.; Yu, G.-H.; Yang, J.-Y.; Dai, S.-F.; Nelson, A.; Braasch, I.; Zhang, X.-G.; Schartl, M.; Edger, P. P.; Han, M.-J.; Zhang, H.-H.: Maternal dominance contributes to subgenome differentiation in allopolyploid fishes. Nature Communications 14 (1), 8357 (2023)

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Yotsui, I.; Matsui, H.; Miyauchi, S.; Iwakawa, H.; Melkonian, K.; Schlueter, T.; Michavila, S.; Kanazawa, T.; Nomura, Y.; Stolze, S. C. et al.; Jeon, H.-W.; Yan, Y.; Harzen, A.; Sugano, S. S.; Shirakawa, M.; Nishihama, R.; Ichihashi, Y.; Gimenez Ibanez, S.; Shirasu, K.; Ueda, T.; Kohchi, T.; Nakagami, H.: LysM-mediated signaling in Marchantia polymorpha highlights the conservation of pattern-triggered immunity in land plants. Current Biology (2023)

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Yu, Y.; Song, W.; Zhai, N.; Zhang, S.; Wang, J.; Wang, S.; Liu, W.; Huang, C.-H.; Ma, H.; Chai, J. et al.; Chang, F.: PXL1 and SERKs act as receptor-coreceptor complexes for the CLE19 peptide to regulate pollen development. Nature Communications 14 (1), 3307 (2023)

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Zeng, Y.; Zheng, Z.; Hessler, G.; Zou, K.; Bautor, J.; Stuttmann, J.; Xue, L.; Parker, J. E.; Cui, H.: Arabidopsis PAD4 promotes the maturation and nuclear accumulation of immune-related cysteine protease RD19. Journal of Experimental Botany, erad454 (2023)

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Zuo, W.; Depotter, J. R. L.; Stolze, S. C.; Nakagami, H.; Doehlemann, G.: A transcriptional activator effector of Ustilago maydis regulates hyperplasia in maize during pathogen-induced tumor formation. Nature Communications 14 (1), 6722 (2023)

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Book Chapter (4)

Book Chapter

Formosa-Jordan, P.; Landrein, B.: Quantifying Gene Expression Domains in Plant Shoot Apical Meristems. In: Methods in Molecular Biology, Vol. 2686, pp. 537 - 551. Springer (2023)

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Melkonian, K.; Stolze, S. C.; Harzen, A.; Nakagami, H.: Proximity-Dependent In Vivo Biotin Labeling for Interactome Mapping in Marchantia polymorpha. In: Methods in Molecular Biology, Vol. 2581, pp. 295 - 308 (2023)

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Book Chapter

Scott, A. D.; Van de Velde, J. D.; Novikova, P. Y.: Inference of Polyploid Origin and Inheritance Mode from Population Genomic Data. In: POLYPLOIDY: Methods and Protocols, Vol. 2545, pp. 279 - 295 (Ed. Van de Peer, Y.). Humana, New York (2023)

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Book Chapter

Sun, H.-Q.; Campoy, J. A.; Schneeberger, K.: Gamete Binning to Achieve Haplotype-Resolved Genome Assembly. In: Methods in Molecular Biology, Vol. 2590, pp. 201 - 218. Springer (2023)

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