Max Planck Institute for Plant Breeding Research

MPIPZ Scientific Publications since 2002

Journal Article (89)

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Acevedo Garcia, J.; Walden, K.; Leissing, F.; Baumgarten, K.; Drwiega, K.; Kwaaitaal, M.; Reinstadler, A.; Freh, M.; Dong, X.; James, G. V. et al.; Baus, L. C.; Mascher, M.; Stein, N.; Schneeberger, K.; Brocke-Ahmadinejad, N.; Kollmar, M.; Schulze-Lefert, P.; Panstruga, R.: Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. The Plant Journal (2022)

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Almario, J.; Mahmoudi, M.; Kroll, S.; Agler, M.T.; Placzek, A.; Mari, A.; Kemen, E.: The Leaf Microbiome of Arabidopsis Displays Reproducible Dynamics and Patterns throughout the Growing Season. mBio 13 (3) (2022)

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Amanda, D.; Frey, F. P.; Neumann, U.; Przybyl, M.; Šimura, J.; Zhang, Y.; Chen, Z.; Gallavotti, A.; Fernie, A. R.; Ljung, K. et al.; Acosta, I. F.: Auxin boosts energy generation pathways to fuel pollen maturation in barley. Current Biology (2022)

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Bonthala, V. S.; Stich, B.: Genetic Divergence of Lineage-Specific Tandemly Duplicated Gene Clusters in Four Diploid Potato Genotypes. Frontiers in Plant Science 13, 875202 (2022)

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Bourceret, A.; Guan, R.; Dorau, K.; Mansfeldt, T.; Omidbakhshfard, A.; Medeiros, D. B.; Fernie, A. R.; Hofmann, J.; Sonnewald, U.; Mayer, J. et al.; Gerlach, N.; The RECONSTRUCT consortium; Bucher, M.; Garrido Oter, R.; Spaepen, S.; Schulze-Lefert, P.: Maize Field Study Reveals Covaried Microbiota and Metabolic Changes in Roots over Plant Growth. mBio, e02584-21 (2022)

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Bowman, J. L.; Arteaga-Vazquez, M.; Berger, F.; Briginshaw, L. N.; Carella, P.; Aguilar-Cruz, A.; Davies, K. M.; Dierschke, T.; Dolan, L.; Dorantes-Acosta, A. E. et al.; Fisher, T. J.; Flores-Sandoval, E.; Futagami, K.; Ishizaki, K.; Jibran, R.; Kanazawa, T.; Kato, H.; Kohchi, T.; Levins, J.; Lin, S.-S.; Nakagami, H.; Nishihama, R.; Romani, F.; Schornack, S.; Tanizawa, Y.; Tsuzuki, M.; Ueda, T.; Watanabe, Y.; Yamato, K. T.; Zachgo, S.: The renaissance and enlightenment of Marchantia as a model system. Plant Cell 27, pp. 3512 - 3542 (2022)

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Casale, F.; Van Inghelandt, D.; Weisweiler, M.; Li, J. Q.; Stich, B.: Genomic prediction of the recombination rate variation in barley - A route to highly recombinogenic genotypes. Plant Biotechnology Journal 20, pp. 676 - 690 (2022)

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Chandrasekar, B.; Wanke, A.; Wawra, S.; Saake, P.; Mahdi, L.; Charura, N.; Neidert, M.; Poschmann, G.; Malisic, M.; Thiele, M. et al.; Stuehler, K.; Dama, M.; Pauly, M.; Zuccaro, A.: Fungi hijack a ubiquitous plant apoplastic endoglucanase to release a ROS scavenging beta-glucan decasaccharide to subvert immune responses. Plant Cell 34 (7), pp. 2765 - 2784 (2022)

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Copeland, C.: The feeling is mutual: Increased host putrescine biosynthesis promotes both plant and endophyte growth. Plant Physiology 188 (4), pp. 1939 - 1941 (2022)

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Dongus, J. A.; Bhandari, D. D.; Penner, E.; Lapin, D.; Stolze, S. C.; Harzen, A.; Patel, M.; Archer, L.; Dijkgraaf, L.; Shah, J. et al.; Nakagami, H.; Parker, J. E.: Cavity surface residues of PAD4 and SAG101 contribute to EDS1 dimer signaling specificity in plant immunity. The Plant Journal 110 (5), pp. 1415 - 1432 (2022)

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Durán, P.; Ellis, T. J.; Thiergart, T.; Agren, J.; Hacquard, S.: Climate drives rhizosphere microbiome variation and divergent selection between geographically distant Arabidopsis populations. New Phytologist 236, pp. 608 - 621 (2022)

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Durán, P.; Flores-Uribe, J.; Wippel, K.; Zhang, P.; Guan, R.; Melkonian, B.; Melkonian, M.; Garrido Oter, R.; Zhang, P.: Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota. Nature Communications 13 (406) (2022)

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Durand, S.; Lian, Q.; Jing, J.; Ernst, M.; Grelon, M.; Zwicker, D.; Mercier, R.: Joint control of meiotic crossover patterning by the synaptonemal complex and HEI10 dosage. Nature Communications 13, 5999 (2022)

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Emonet, A.; Hay, A.: Development and diversity of lignin patterns. Plant Physiology 190 (1), pp. 31 - 43 (2022)

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Flood, P. J.; Nowrousian, M.; Huettel, B.; Woehle, C.; Becker, K.; Wollenweber, T. E.; Begerow, D.; Grefen, C.: Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume. BMC genomic data 23 (1), 70 (2022)

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Foerderer, A.; Li, E.; Lawson, A. W.; Deng, Y.-N.; Sun, Y.; Logemann, E.; Zhang, X.; Wen, J.; Han, Z.; Chang, J. et al.; Chen, Y.; Schulze-Lefert, P.; Chai, J.: A wheat resistosome defines common principles of immune receptor channels. Nature 610, pp. 532 - 539 (2022)

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Foerderer, A.; Yu, D.; Li, E.; Chai, J.: Resistosomes at the interface of pathogens and plants. Current Opinion in Plant Biology 67, 102212 (2022)

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Fuessl, M.; König, A.-C.; Eirich, J.; Hartl, M.; Kleinknecht, L.; Bohne, A.-V.; Harzen, A.; Kramer, K.; Leister, D.; Nickelsen, J. et al.; Finkemeier, I.: Dynamic light- and acetate-dependent regulation of the proteome and lysine acetylome of Chlamydomonas. The Plant Journal 109 (1), pp. 261 - 277 (2022)

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Fulgione, A.; Neto, C.; Elfarargi, A. F.; Tergemina, E.; Ansari, S.; Göktay, M.; Dinis, H.; Döring, N.; Flood, P. J.; Rodriguez-Pacheco, S. et al.; Walden, N.; Koch, M.A.; Roux, F.; Hermisson, J.; Hancock, A. M.: Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages. Nature Communications 13 (1), 1461 (2022)

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Gao, H.; Coupland, C.: PIF4 and CDF2 co-operate to regulate cell elongation in Arabidopsis thaliana. Nature Plants (2022)

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Gao, H.; Song, W.; Severing, E.; Vayssières, A.; Huettel, B.; Franzen, R.; Richter, R.; Chai, J.; Coupland, G.: PIF4 enhances DNA binding by CDF2 to co-regulate target gene expression and promote Arabidopsis hypocotyl cell elongation. Nature Plants 8, pp. 1082 - 1093 (2022)

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Goel, M.; Schneeberger, K.: plotsr: visualizing structural similarities and rearrangements between multiple genomes. Bioinformatics 38 (10), pp. 2922 - 2926 (2022)

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Hacquard, S.; Wang, E.; Slater, H.; Martin, F.: Impact of global change on the plant microbiome. Special Issue 234 (6), pp. 1907 - 1909 (2022)

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Hajheidari, M.; Gerlach, N.; Dorau, K.; Omidbakhshfard, M. A.; Pesch, L.; Hofmann, J.; Hallab, A.; Ponce-Soto, G. Y.; Kuhalskaya, A.; Medeiros, D. B. et al.; Bourceret, A.; the RECONSTRUCT Consortium; Usadel, B.; Mayer, J.; Fernie, A.; Mansfeldt, T.; Sonnewald, U.; Bucher, M.: Crop genetic diversity uncovers metabolites, elements, and gene networks predicted to be associated with high plant biomass yields in maize. PNAS Nexus 4 (1), pgac068 (2022)

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Hofstatter, P. G.; Thangavel, G.; Lux, T.; Neumann, P.; Vondrak, T.; Novak, P.; Zhang, M.; Costa, L.; Castellani, M.; Scott, A. et al.; Toegelová, H.; Fuchs, J.; Mata-Sucre, Y.; Dias, Y.; Vanzela, A. L. L.; Huettel, B.; Almeida, C. C. S.; Šimková, H.; Souza, G.; Pedrosa-Harand, A.; Macas, J.; Mayer, K. F. X.; Houben, A.; Marques, A.: Repeat-based holocentromeres influence genome architecture and karyotype evolution. Cell (2022)

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Huang, S.; Jia, A.; Song, W.; Hessler, G.; Meng, Y.; Sun, Y.; Xu, L.; Laessle, H.; Jirschitzka, J.; Ma, S. et al.; Xiao, Y.; Yu, D.; Hou, J.; Liu, R.; Sun, H.; Liu, X.; Han, Z.; Chang, J.; Parker, J. E.; Chai, J.: Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science (2022)

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Jia, A.; Huang, S.; Song, W.; Wang, J.; Meng, Y.; Sun, Y.; Xu, L.; Laessle, H.; Jirschitzka, J.; Hou, J. et al.; Zhang, T.; Yu, W.; Hessler, G.; Li, E.; Ma, S.; Yu, D.; Gebauer, J.; Baumann, U.; Liu, X.; Han, Z.; Chang, J.; Parker, J. E.; Chai, J.: TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science (2022)

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Krzesłowska, M.; Timmers, T.; Mleczek, M.; Niedzielski, P.; Rabęda, I.; Woźny, A.; Goliński, P.: Alterations of root architecture and cell wall modifications in Tilia cordata Miller (Linden) growing on mining sludge. Environmental Pollution, pp. 247 - 259 (2022)

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Lapin, D.; Johanndrees, O.; Wu, Z.; Li, X.; Parker, J. E.: Molecular innovations in plant TIR-based immunity signaling. Plant Cell 34, pp. 1479 - 1496 (2022)

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Lebreton, A.; Tang, N.; Kuo, A.; LaButti, K.; Andreopoulos, W.; Drula, E.; Miyauchi, S.; Barry, K.; Clum, A.; Lipzen, A. et al.; Mousain, D.; Ng, V.; Wang, R.; Dai, Y.; Henrissat, B.; Grigoriev, I. V.; Guerin-Laguette, A.; Yu, F.; Martin, F. M.: Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms. New Phytologist 235 (1), pp. 306 - 319 (2022)

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Leenen, E.; Erger, F.; Altmuller, J.; Wenzel, A.; Thiele, H.; Harth, A.; Tschernoster, N.; Lokhande, S.; Joerres, A.; Becker, J.-U. et al.; Ekici, A.; Huettel, B.; Beck, B.; Weidemann, A.: Alport syndrome and autosomal dominant tubulointerstitial kidney disease frequently underlie end-stage renal disease of unknown origin-a single-center analysis. Nephrology Dialysis Transplantation 37 (10), pp. 1895 - 1905 (2022)

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Lian, Q.; Solier, V.; Walkemeier, B.; Durand, S.; Huettel, B.; Schneeberger, K.; Mercier, R.: The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications 13 (1), 3828 (2022)

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Liang, Z.; Myers, Z. A.; Petrella, D.; Engelhorn, J.; Hartwig, T.; Springer, N. M.: Mapping responsive genomic elements to heat stress in a maize diversity panel. Genome Biology 23 (1), 234 (2022)

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Liu, L.; Song, W.; Huang, S.; Jiang, K.; Moriwaki, Y.; Wang, Y.; Men, Y.; Zhang, D.; Wen, X.; Han, Z. et al.; Chai, J.; Guo, H.: Extracellular pH sensing by plant cell-surface peptide-receptor complexes. Cell 185 (18), pp. 3341 - 3355.e13 (2022)

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Liu, S.; Strauss, S.; Adibi, M.; Mosca, G.; Yoshida, S.; Dello Ioio, R.; Runions, A.; Andersen, T. G.; Grossmann, G.; Huijser, P. et al.; Smith, R. S.; Tsiantis, M.: Cytokinin promotes growth cessation in the Arabidopsis root. Current Biology 32 (9), pp. 1974 - 1985 (2022)

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Loo, E. P. -.; Tajima, Y.; Yamada, K.; Kido, S.; Hirase, T.; Ariga, H.; Fujiwara, T.; Tanaka, K.; Taji, T.; Somssich, I. E. et al.; Parker, J. E.; Saijo, Y.: Recognition of Microbe- and Damage-Associated Molecular Patterns by Leucine-Rich Repeat Pattern Recognition Receptor Kinases Confers Salt Tolerance in Plants. Molecular Plant-Microbe Interactions 35 (7), pp. 554 - 566 (2022)

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Ma, K.-W.; Ordon, J.; Schulze-Lefert, P.: Gnotobiotic Plant Systems for Reconstitution and Functional Studies of the Root Microbiota. Current Protocols 2, e362 (2022)

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Majda, M.; Trozzi, N.; Mosca, G.; Smith, R. S.: How Cell Geometry and Cellular Patterning Influence Tissue Stiffness. International Journal of Molecular Sciences 23 (10), 5651 (2022)

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Mase, H.; Nakagami, H.; Okamoto, T.; Takahashi, T.; Motose, H.: Establishment and application of novel culture methods in Marchantia polymorpha: persistent tip growth is required for substrate penetration by rhizoids. Communicative & Integrative Biology 15 (1), pp. 164 - 167 (2022)

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Mataigne, V.; Vannier, N.; Vandenkoornhuyse, P.; Hacquard, S.: Multi-genome metabolic modeling predicts functional inter-dependencies in the Arabidopsis root microbiome. Microbiome 10, 217 (2022)

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Matsumoto, A.; Schlueter, T.; Melkonian, K.; Takeda, A.; Nakagami, H.; Mine, A.: A versatile Tn7 transposon-based bioluminescence tagging tool for quantitative and spatial detection of bacteria in plants. Plant Communications 3 (1), 100227 (2022)

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Melkonian, K.; Stolze, S. C.; Harzen, A.; Nakagami, H.: miniTurbo-based interactomics of two plasma membrane-localized SNARE proteins in Marchantia polymorpha. New Phytologist 235 (2), pp. 786 - 800 (2022)

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Meyer, F.; Fritz, A.; Deng, Z.-L.; Koslicki, D.; Lesker, T. R.; Gurevich, A.; Robertson, G.; Alser, M.; Antipov, D.; Beghini, F. et al.; Bertrand, D.; Brito, J. J.; Brown, C. T.; Buchmann, J.; Buluc, A.; Chen, B.; Chikhi, R.; Clausen, P. T. L. C.; Cristian, A.; Dabrowski, P. W.; Darling, A. E.; Egan, R.; Eskin, E.; Georganas, E.; Goltsman, E.; Gray, M. A.; Hansen, L. H.; Hofmeyr, S.; Huang, P.; Irber, L.; Jia, H.; Jorgensen, T. S.; Kieser, S. D.; Klemetsen, T.; Kola, A.; Kolmogorov, M.; Korobeynikov, A.; Kwan, J.; LaPierre, N.; Lemaitre, C.; Li, C.; Limasset, A.; Malcher-Miranda, F.; Mangul, S.; Marcelino, V. R.; Marchet, C.; Marijon, P.; Meleshko, D.; Mende, D. R.; Milanese, A.; Nagarajan, N.; Nissen, J.; Nurk, S.; Oliker, L.; Paoli, L.; Peterlongo, P.; Piro, V. C.; Porter, J. S.; Rasmussen, S.; Rees, E. R.; Reinert, K.; Renard, B.; Robertsen, E. M.; Rosen, G. L.; Ruscheweyh, H.-J.; Sarwal, V.; Segata, N.; Seiler, E.; Shi, L.; Sun, F.; Sunagawa, S.; Sorensen, S. J.; Thomas, A.; Tong, C.; Trajkovski, M.; Tremblay, J.; Uritskiy, G.; Vicedomini, R.; Wang, Z.; Wang, Z.; Wang, Z.; Warren, A.; Willassen, N.; Yelick, K.; You, R.; Zeller, G.; Zhao, Z.; Zhu, S.; Zhu, J.; Garrido-Oter, R.; Gastmeier, P.; Hacquard, S.; Haeussler, S.; Khaledi, A.; Maechler, F.; Mesny, F.; Radutoiu, S.; Schulze-Lefert, P.; Smit, N.; Strowig, T.; Bremges, A.; Sczyrba, A.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods 19 (4), pp. 429 - 440 (2022)

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Modesto, I.; Inacio, V.; Novikova, P. Y.; Carrasquinho, I.; Van de Peer, Y.; Miguel, C. M.: SNP Detection in Pinus pinaster Transcriptome and Association with Resistance to Pinewood Nematode. Forests 13 (6), 946 (2022)

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Mueller, M. C.; Kunz, L.; Schudel, S.; Lawson, A. W.; Kammerecker, S.; Isaksson, J.; Wyler, M.; Graf, J.; Sotiropoulos, A. G.; Praz, C. R. et al.; Manser, B.; Wicker, T.; Bourras, S.; Keller, B.: Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance gene in wheat. Proceedings of the National Academy of Sciences of the United States of America 119 (30), e2108808119 (2022)

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Muyle, A. M.; Seymour, D. K.; Lv, Y.; Huettel, B.; Gaut, B. S.: Gene Body Methylation in Plants: Mechanisms, Functions, and Important Implications for Understanding Evolutionary Processes. Genome Biology and Evolution 14 (4), evac038 (2022)

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Nobori, T.; Cao, Y.; Entila, F.; Dahms, E.; Tsuda, Y.; Garrido Oter, R.; Tsuda, K.: Dissecting the cotranscriptome landscape of plants and their microbiota. EMBO Reports 23, e55380 (2022)

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Novikova, P. Y.; Kolesnikova, U. K.; Scott, A. D.: Ancestral self-compatibility facilitates the establishment of allopolyploids in Brassicaceae. Plant Reproduction (2022)

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Oekmen, B.; Jaeger, E.; Schilling, L.; Finke, N.; KLemd, A. M.; Lee, Y. J.; Wemhoner, R.; Pauly, M.; Neumann, U.; Doehlemann, G.: A conserved enzyme of smut fungi facilitates cell-to-cell extension in the plant bundle sheath. Nature Communications 13 (1), 6003 (2022)

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Ortiz, D.; Chen, J.; Outram, M. A.; Saur, I. M. L.; Upadhyaya, N. M.; Mago, R.; Ericsson, D. J.; Cesari, S.; Chen, C.; Williams, S. J. et al.; Dodds, P. N.: The stem rust effector protein AvrSr50 escapes Sr50 recognition by a substitution in a single surface-exposed residue. New Phytologist 234 (2), pp. 592 - 606 (2022)

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