Publications of H.-Q. Sun

Castellani, M.; Zhang, M.; Thangavel, G.; Mata Sucre, Y.; Lux, T.; Campoy, J. A.; Marek, M.; Huettel, B.; Sun, H.-Q.; Mayer, K. F. X. et al.; Schneeberger, K.; Marques, A.: Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants (2024)

Goel, M.; Campoy, J. A.; Krause, K.; Baus, L. C.; Sahu, A.; Sun, H.-Q.; Walkemeier, B.; Marek, M.; Beaudry, R.; Ruiz, D., D. et al.; Huettel, B.; Schneeberger, K.: The vast majority of somatic mutations in plants are layer-specific. Genome Biology: Biology for the Post-Genomic Era 25 (1), 194 (2024)

Sun, H.-Q.; Abeli, P.; Campoy, J. A.; Ruetjes, T.; Krause, K.; Jiao, W.-B.; Beaudry, R.; Schneeberger, K.: The identification and analysis of meristematic mutations within the apple tree that developed the RubyMac sport mutation. BMC Plant Biology 24 (1), 912 (2024)

Sun, H.-Q.; Jiao, W.-B.; Campoy, J. A.; Krause, K.; Goel, M.; Folz-Donahue, K.; Kukat, C.; Huettel, B.; Schneeberger, K.: Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics 54 (3), pp. 342 - 348 (2022)

Mapar, M.; Chopra, D.; Stephan, L.; Schrader, A.; Sun, H.-Q.; Schneeberger, K.; Albani, M.; Coupland, G.; Huelskamp, M.: Genetic and Molecular Analysis of Root Hair Development in Arabis alpina. Frontiers in Plant Science 12, 767772 (2021)

Zhao, C.; Tang, Y.; Wang, J.; Zeng, Y.; Sun, H.-Q.; Zheng, Z.; Su, R.; Schneeberger, K.; Parker, J. E.; Cui, H.: A mis-regulated cyclic nucleotide-gated channel mediates cytosolic calcium elevation and activates immunity in Arabidopsis. New Phytologist 230 (3), pp. 1078 - 1094 (2021)

Campoy, J. A.; Sun, H.-Q.; Goel, M.; Jiao, W.-B.; Folz-Donahue, K.; Wang, N.; Rubio, M.; Liu, C.; Kukat, C.; Ruiz, D. et al.; Huettel, B.; Schneeberger, K.: Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biology and Evolution 21 (1), 306 (2020)

de Leone, M. J.; Esteban Hernando, C.; Romanowski, A.; Careno, D.l. A.; Faigon Soverna, A.; Sun, H.-Q.; Bologna, N. G.; Vazquez, M.; Schneeberger, K.; Yanovsky, M. J.: Bacterial Infection Disrupts Clock Gene Expression to Attenuate Immune Responses. Current Biology 30 (9), pp. 1740 - 1747.e6 (2020)

Sang, Q.; Pajoro, A.; Sun, H.-Q.; Song, B.; Yang, X.; Stolze, S. C.; Andrés Lalaguna, F.; Schneeberger, K.; Nakagami, H.; Coupland, G.: Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition. The Plant Cell (2020)

Goel, M.; Sun, H.-Q.; Jiao, W.-B.; Schneeberger, K.: SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies. Genome Biology: Biology for the Post-Genomic Era 20 (1), 277 (2019)

Kiefer, C.; Willing, E.-M.; Jiao, W.-B.; Sun, H.-Q.; Piednoel, M.; Huemann, U.; Hartwig, B.; Huemann, U.; Koch, M. A.; Schneeberger, K.: Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation. Nature Plants 5 (8), pp. 846 - 855 (2019)

Mohrholz, A.; Sun, H.-Q.; Gloeckner, N.; Hummel, S.; Kolukisaoglu, U.; Schneeberger, K.; Harter, K.: The Striking Flower-in-Flower Phenotype of Arabidopsis thaliana Nossen (No-0) is Caused by a Novel LEAFY Allele. PLANTS-BASEL 8 (12), 599 (2019)

Sun, H.-Q.; Rowan, B. A.; Flood, P. J.; Brandt, R.; Fuss, J.; Hancock, A. M.; Michelmore, R. W.; Huettel, B.; Schneeberger, K.: Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. Nature Communications 10, 4310 (2019)

Ibanez, C.; Delker, C.; Martinez, C.; Buerstenbinder, K.; Janitza, P.; Lippmann, R.; Ludwig, W.; Sun, H.-Q.; James, G. V.; Klecker, M. et al.; Grossjohann, A.; Schneeberger, K.; Prat, S.; Quint, M.: Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology 28 (2), pp. 303 - 310.e3 (2018)

Sun, H.-Q.; Ding, J.; Piednoel, M.; Schneeberger, K.: findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 34 (4), pp. 550 - 557 (2018)

Sun, H.-Q.; Schneeberger, K.: SHOREmap v3.0: fast and accurate identification of causal mutations from forward genetic screens. Methods in molecular biology (Clifton, N.J.) 1284, pp. 381 - 95 (2015)

Sun, H.-Q.; Campoy, J. A.; Schneeberger, K.: Gamete Binning to Achieve Haplotype-Resolved Genome Assembly. In: Methods in Molecular Biology, Vol. 2590, pp. 201 - 218. Springer (2023)