Publications of X. Gan

Cui, S.; Song, P.; Wang, C.; Chen, S.; Hao, B.; Xu, Z.; Cai, L.; Chen, X.; Zhu, S.; Gan, X. et al.; Dong, H.; Hu, Y.; Zhou, L.; Hou, H.; Tian, Y.; Liu, X.; Chen, L.; Liu, S.; Jiang, L.; Wang, H.; Jia, G.; Zhou, S.; Wan, J.: The RNA binding protein EHD6 recruits the m 6 A reader YTH07 and sequesters OsCOL4 mRNA into phase-separated ribonucleoprotein condensates to promote rice flowering. Molecular Plant 17 (6), pp. 935 - 954 (2024)

Hu, Z.; Wilson Sánchez, D.; Bhatia, N.; Rast, M. I.; Wu, A.; Vlad, D.; McGuire, L.; Nikolov, L. A.; Laufs, P.; Gan, X. et al.; Laurent, S.; Runions, A.; Tsiantis, M.: A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. PNAS 121 (26), e2321877121 (2024)

Xuan, Y. H.; Wang, Y.; Gao, L.; Gan, X.: Editorial: Novel insights into the regulatory role of sugar and amino acids signaling in plant-microbe interactions. Frontiers in Plant Science 14, 1261186 (2024)

Awad, M.; Gan, X.: GALA: a computational framework for de novo chromosome-by chromosome assembly with long reads. Nature Communications 14, 204 (2023)

Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

Galstyan, A.; Sarchet, P.; Campos Martin, R.; Adibi, M.; Lachezar, N.; Pérez Antón, M.; Rambaud-Lavigne, L.; Gan, X.; Hay, A.: INDEHISCENT regulates explosive seed dispersal. bioRxive, 448014 (2021)

Winkelmueller, T. M.; Entila, F.; Anver, S.; Piasecka, A.; Song, B.; Dahms, E.; Sakakibara, H.; Gan, X.; Kułak, K.; Sawikowska, A. et al.; Krajewski, P.; Garrido-Oter, R.; Tsiantis, M.; Fukushima, K.; Schulze-Lefert, P.; Laurent, S.; Bednarek, P.; Tsuda, K.: Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. The Plant Cell, koab073 (2021)

Akiyama, R.; Sun, J.; Hatakeyama, M.; Lischer, H. E. L.; Briskine, R. V.; Hay, A.; Gan, X.; Tsiantis, M.; Kudoh, H.; Kanaoka, M. et al.; Sese, J.; Shimizu, K. K.; Shimizu-Inatsugi, R.: Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species. New Phytologist 229, pp. 3587 - 3601 (2020)

Zhang, Z.; Runions, A.; Mentink, R. A.; Kierzkowski, D.; Karady, M.; Hashemi, B.; Huijser, P.; Strauß, S.; Gan, X.; Ljung, K. et al.; Tsiantis, M.: A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form. Current Biology 30, pp. 4857 - 4868.e6 (2020)

Zhou, Y.; Gan, X.; Vinegra de la Torre, N.; Neumann, U.; Albani, M.: Beyond flowering time: diverse roles of an APETALA2-like transcription factor in shoot architecture and perennial traits. New Phytologist (2020)

Chen, Q.; Jiang, T.; Liu, Y.-X.; Liu, H.; Zhao, T.; Liu, Z.; Gan, X.; Hallab, A.; Wang, X.; He, J. et al.; Ma, Y.; Zhang, F.; Jin, T.; Schranz, M. E.; Wang, Y.; Bai, Y.; Wang, G.: Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota. SCIENCE CHINA-LIFE SCIENCES 62 (7), pp. 947 - 958 (2019)

Hajheidari, M.; Wang, Y.; Bhatia, N.; Vuolo, F.; Franco-Zorrilla, J. M.; Karady, M.; Mentink, R. A.; Wu, A.; Rilwan Oluwatobi, B. R.; Müller, B. et al.; Dello Ioio, R.; Laurent, S.; Ljung, K.; Huijser, P.; Gan, X.; Tsiantis, M.: Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity. Current Biology (2019)

Molina-Contreras, M. J.; Paulisic, S.; Then, C.; Moreno-Romero, J.; Pastor-Andreu, P.; Morelli, L.; Roig-Villanova, I.; Jenkins, H.; Hallab, A.; Gan, X. et al.; Gomez-Cadenas, A.; Tsiantis, M.; Rodriguez-Concepcion, M.; Martinez-Garcia, J. F.: Photoreceptor Activity Contributes to Contrasting Responses to Shade in Cardamine and Arabidopsis Seedlings. The Plant Cell 31 (11), pp. 2649 - 2663 (2019)

Nikolov, L. A.; Shushkov, P.; Nevado, B.; Gan, X.; Al-Shehbaz, I. A.; Filatov, D.; Bailey, C. D.; Tsiantis, M.: Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytologist 222, pp. 1638 - 1651 (2019)

Song, B.; Sang, Q.; Wang, H.; Pei, H.; Gan, X.; Wang, F.: Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy. Frontiers in Genetics 10, 1046 (2019)

Song, B.; Mott, R.; Gan, X.: Recovery of novel association loci in Arabidopsis thaliana and Drosophila melanogaster through leveraging INDELs association and integrated burden test. PLoS Genetics 14 (10), e1007699 (2018)

Vuolo, F.; Kierzkowski, D.; Runions, A.; Hajheidari, M.; Mentink, R. A.; Das Gupta, M.; Zhang, Z.; Vlad, D.; Wang, Y.; Pecinka, A. et al.; Gan, X.; Hay, A.; Huijser, P.; Tsiantis, M.: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32, pp. 1361 - 1366 (2018)

Imprialou, M.; Kahles, A.; Steffen, J. G.; Osborne, E. J.; Gan, X.; Lempe, J.; Bhomra, A.; Belfield, E.; Visscher, A.; Greenhalgh, R. et al.; Harberd, N. P.; Goram, R.; Hein, J.; Robert-Seilaniantz, A.; Jones, J.; Stegle, O.; Kover, P.; Tsiantis, M.; Nordborg, M.; Rätsch , G.; Clark, R. M.; Mott, R.: Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205 (4), pp. 1425 - 1441 (2017)

Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K. M.; Cao, J.; Chae, E.; Dezwaan, T. M.; Ding, W. et al.; Ecker, J. R.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D. G.; Hancock, A. M.; Henz, S. R.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R. A.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T. P.; Mott, R.; Muliyati, N.W.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P. Y.; Picó, F. X.; Platzer, A.; Rabanal, F. A.; Rodriguez, A.; Rowan, B. A.; Salomé, P. A.; Schmid, K. J.; Schmitz, R. J.; Seren, Ü.; Sperone, F. G.; Sudkamp, M.; Svardal, H.; Tanzer, M. M.; Todd, D.; Volchenboum, S. L.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

Gan, X.; Hay, A.; Kwantes, M.; Haberer, G.; Hallab, A.; Dello Ioio, R.; Hofhuis, H.; Pieper, B.; Cartolano, M.; Neumann, U. et al.; Nikolov, L. A.; Song, B.; Hajheidari, M.; Briskine, R.; Kougioumoutzi, E.; Vlad, D.; Broholm, S.; Hein, J.; Meksem, K.; Lightfoot, D.; Shimizu, K. K.; Shimizu-Inatsugi, R.; Imprialou, M.; Kudrna, D.; Wing, R.; Sato, S.; Huijser, P.; Filatov, D.; Mayer, K. F. X.; Mott, R.; Tsiantis, M.: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants 2 (10), 16167 (2016)

Hofhuis, H.; Moulton, D.; Lessinnes, T.; Routier-Kierzkowska, A.-L.; Bomphrey, R.J.; Mosca, G.; Reinhardt, H.; Sarchet, P.; Gan, X.; Tsiantis, M. et al.; Ventikos, Y.; Walker, S.; Goriely, A.; Smith, R. S.; Hay, A.: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166 (1), pp. 222 - 33 (2016)

Cai, N.; Bigdeli, T. B.; Kretzschmar, W.; Li, Y.; Liang, J.; Song, L.; Hu, J.; Li, Q.; Jin, W.; Hu, Z. et al.; Wang, G.; Wang, L.; Qian, P.; Liu, Y.; Jiang, T.; Lu, Y.; Zhang, X.; Yin, Y.; Li, Y.; Xu, X.; Gao, J.; Reimers, M.; Webb, T.; Riley, B.; Bacanu, S.; Peterson, R. E.; Chen, Y.; Zhong, H.; Liu, Z.; Wang, G.; Sun, J.; Sang, H.; Jiang, G.; Zhou, X.; Li, Y.; Li, Y.; Zhang, W.; Wang, X.; Fang, X.; Pan, R.; Miao, G.; Zhang, Q.; Hu, J.; Yu, F.; Du, B.; Sang, W.; Li, K.; Chen, G.; Cai, M.; Yang, L.; Yang, D.; Ha, B.; Hong, X.; Deng, H.; Li, G.; Li, K.; Song, Y.; Gao, S.; Zhang, J.; Gan, Z.; Meng, H.; Pan, J.; Gao, C.; Zhang, K.; Sun, N.; Li, Y.; Niu, Q.; Zhang, Y.; Liu, T.; Hu, C.; Zhang, Z.; Lv, L.; Dong, J.; Wang, X.; Tao, M.; Wang, X.; Xia, J.; Rong, H.; He, Q.; Liu, T.; Huang, G.; Mei, Q.; Shen, Z.; Liu, Y.; Shen, J.; Tian, T.; Liu, X.; Wu, W.; Gu, D.; Fu, G.; Shi, J.; Chen, Y.; Gan, X.; Liu, L.; Wang, L.; Yang, F.; Cong, E.; Marchini, J.; Yang, H.; Wang, J.; Shi, S.; Mott, R.; Xu, Q.; Wang, J.; Kendler, K. S.; Flint, J.: Sparse whole-genome sequencing identifies two loci for major depressive disorder. Nature 523 (7562), pp. 588 - 591 (2015)

Cai, N.; Chang, S.; Li, Y.; Li, Q.; Hu, J.; Liang, J.; Song, L.; Kretzschmar, W.; Gan, X.; Nicod, J. et al.; Rivera, M.; Deng, H.; Du, B.; Li, K.; Sang, W.; Gao, J.; Gao, S.; Ha, B.; Ho, H.-Y.; Hu, C.; Hu, J.; Hu, Z.; Huang, G.; Jiang, G.; Jiang, T.; Jin, W.; Li, G.; Li, K.; Li, Y.; Li, Y.; Li, Y.; Lin, Y.-T.; Liu, L.; Liu, T.; Liu, Y.; Liu, Y.; Lu, Y.; Lv, L.; Meng, H.; Qian, P.; Sang, H.; Shen, J.; Shi, J.; Sun, J.; Tao, M.; Wang, G.; Wang, G.; Wang, J.; Wang, L.; Wang, X.; Wang, X.; Yang, H.; Yang, L.; Yin, Y.; Zhang, J.; Zhang, K.; Sun, N.; Zhang, W.; Zhang, X.; Zhang, Z.; Zhong, H.; Breen, G.; Wang, J.; Marchini, J.; Chen, Y.; Xu, Q.; Xu, X.; Mott, R.; Huang, G.-J.; Kendler, K.; Flintl, J.: Molecular Signatures of Major Depression. CURRENT BIOLOGY 25 (9), pp. 1146 - 1156 (2015)

Hay, A.; Pieper, B.; Cooke, E.; Mandakova, T.; Cartolano, M.; Tattersall, A. D.; Ioio, R. D.; McGowan, S. J.; Barkoulas, M.; Galinha, C. et al.; Rast, M. I.; Hofhuis, H.; Then, C.; Plieske, J.; Ganal, M.; Mott, R.; Martinez-Garcia, J. F.; Carine, M. A.; Scotland, R. W.; Gan, X.; Filatov, D. A.; Lysak, M. A.; Tsiantis, M.: Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal 78 (1), pp. 1 - 15 (2014)

Nelson, A. D. L.; Forsythe, E. S.; Gan, X.; Tsiantis, M.; Beilstein, M. A.: Extending the model of Arabidopsis telomere length and composition across Brassicaceae. SI 22 (2), pp. 153 - 166 (2014)

Vlad, D.; Kierzkowski, D.; Rast, M. I.; Vuolo, F.; Dello Ioio, R.; Galinha, C.; Gan, X.; Hajheidari, M.; Hay, A.; Smith, R. S. et al.; Huijser, P.; Bailey, C. D.; Tsiantis, M.: Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene. Science 343 (6172), pp. 780 - 783 (2014)

Emonet, A.; Awad, M.; Tikhomirov, N.; Vasilarou, M.; Pérez Antón, M.; Gan, X.; Novikova, P. Y.; Hay, A.: Polyploid genome assembly of Cardamine chenopodiifolia. Gigabyte (2024)