Scientific Publications since 2002

Journal Article

Doermann, P.; Kim, H.; Ott, T.; Schulze-Lefert, P.; Trujillo, M.; Wewer, V.; Hueckelhoven, R.: Cell-autonomous defense, re-organization and trafficking of membranes in plant-microbe interactions. NEW PHYTOLOGIST 204 (4), pp. 815 - 822 (2014)

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Dohm, J. C.; Minoche, A. E.; Holtgraewe, D.; Capella-Gutierrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Rossleff Soerensen, T.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P. F.; Schmidt, T.; Gabaldon, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). NATURE 505 (7484), pp. 546 - + (2014)

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Dong, S.; Stam, R.; Cano, L. M.; Song, J.; Sklenar, J.; Yoshida, K.; Bozkurt, T. O.; Oliva, R.; Liu, Z.; Tian, M. et al.; Win, J.; Banfield, M. J.; Jones, A. M. E.; Van der Hoorn, R. A. L.; Kamoun, S.: Effector Specialization in a Lineage of the Irish Potato Famine Pathogen. SCIENCE 343 (6170), pp. 552 - 555 (2014)

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Duemcke, S.; Braeuer, J.; Anchang, B.; Spang, R.; Beerenwinkel, N.; Tresch, A.: Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics 30 (3), pp. 414 - 419 (2014)

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Duemcke, S.; Mansmann, U.; Tresch, A.: A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours. PLoS One 9 (10), e107955 (2014)

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El Zawily, A. M.; Schwarzlaender, M.; Finkemeier, I.; Johnston, I. G.; Benamar, A.; Cao, Y.; Gissot, C.; Meyer, A. J.; Wilson, K.; Datla, R. et al.; Macherel, D.; Jones, N. S.; Logan, D. C.: FRIENDLY Regulates Mitochondrial Distribution, Fusion, and Quality Control in Arabidopsis. Plant Physiology 166 (2), pp. 808 - U517 (2014)

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El-Soda, M.; Boer, M. P.; Bagheri, H.; Hanhart, C. J.; Koornneef, M.; Aarts, M. G. M.: Genotypeenvironment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes. Journal of Experimental Botany 65 (2), pp. 697 - 708 (2014)

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El-Soda, M.; Malosetti, M.; Zwaan, B. J.; Koornneef, M.; Aarts, M. G. M.: Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis. Trends in Plant Science 19 (6), pp. 390 - 398 (2014)

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Emperle, M.; Rajavelu, A.; Reinhardt, R.; Jurkowska, R. Z.; Jeltsch, A.: Cooperative DNA Binding and Protein/DNA Fiber Formation Increases the Activity of the Dnmt3a DNA Methyltransferase. The Journal of Biological Chemistry 289 (43), pp. 29602 - 29613 (2014)

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Fischer, B.; Metzger, M.; Richardson, R.; Knyphausen, P.; Ramezani, T.; Franzen, R.; Schmelzer, E.; Bloch, W.; Carney, T. J.; Hammerschmidt, M.: p53 and TAp63 Promote Keratinocyte Proliferation and Differentiation in Breeding Tubercles of the Zebrafish. PLoS Genetics 10 (1), e1004048 (2014)

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Fricano, A.; Brandolini, A.; Rossini, L.; Sourdille, P.; Wunder, J.; Effgen, S.; Hidalgo, A.; Erba, D.; Piffanelli, P.; Salamini, F.: Crossability of Triticum urartu and Triticum monococcum Wheats, Homoeologous Recombination, and Description of a Panel of Interspecific Introgression Lines. G3-GENES GENOMES GENETICS 4 (10), pp. 1931 - 1941 (2014)

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Garcia-Molina, A.; Xing, S. P.; Huijser, P.: A Conserved KIN17 Curved DNA-Binding Domain Protein Assembles with SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 to Adapt Arabidopsis Growth and Development to Limiting Copper Availability. Plant Physiology 164 (2), pp. 828 - 840 (2014)

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Garcia-Molina, A.; Xing, S. P.; Huijser, P.: Functional characterisation of Arabidopsis SPL7 conserved protein domains suggests novel regulatory mechanisms in the Cu deficiency response. BMC Plant Biology 14, 231 (2014)

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Gloggnitzer, J.; Akimcheva, S.; Srinivasan, A.; Kusenda, B.; Riehs, N.; Stampfl, H.; Bautor, J.; Dekrout, B.; Jonak, C.; Jimenez-Gomez, J. M. et al.; Parker, J. E.; Riha, K.: Nonsense-Mediated mRNA Decay Modulates Immune Receptor Levels to Regulate Plant Antibacterial Defense. CELL HOST & MICROBE 16 (3), pp. 376 - 390 (2014)

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Gomes, A. S.; Alves, R. N.; Stueber, K.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: Transcriptome of the Atlantic halibut (Hippoglossus hippoglossus). MARINE GENOMICS 18, pp. 101 - 103 (2014)

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Griebel, T.; Maekawa, T.; Parker, J. E.: NOD-like receptor cooperativity in effector-triggered immunity. Trends in Immunology 35 (11), pp. 562 - 570 (2014)

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Guttman, D. S.; McHardy, A. C.; Schulze-Lefert, P.: Microbial genome-enabled insights into plant-microorganism interactions. Nature Reviews Genetics 15 (12), pp. 797 - 813 (2014)

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Habte, E.; Mueller, L. M.; Shtaya, M.; Davis, S. J.; von Korff, M.: Osmotic stress at the barley root affects expression of circadian clock genes in the shoot. Plant, Cell and Environment 37 (6), pp. 1321 - 1337 (2014)

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Hay, A.; Pieper, B.; Cooke, E.; Mandakova, T.; Cartolano, M.; Tattersall, A. D.; Ioio, R. D.; McGowan, S. J.; Barkoulas, M.; Galinha, C. et al.; Rast, M. I.; Hofhuis, H.; Then, C.; Plieske, J.; Ganal, M.; Mott, R.; Martinez-Garcia, J. F.; Carine, M. A.; Scotland, R. W.; Gan, X.; Filatov, D. A.; Lysak, M. A.; Tsiantis, M.: Cardamine hirsuta: a versatile genetic system for comparative studies. The Plant Journal 78 (1), pp. 1 - 15 (2014)

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Horn, F.; Habekuss, A.; Stich, B.: Genes involved in barley yellow dwarf virus resistance of maize. Theoretical and Applied Genetics 127 (12), pp. 2575 - 2584 (2014)

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Hu, J.; Zhou, Y.; He, F.; Dong, X.; Liu, L.-Y.; Coupland, G.; Turck, F.; de Meaux, J.: miR824-Regulated AGAMOUS-LIKE16 Contributes to Flowering Time Repression in Arabidopsis. The Plant Cell 26 (5), pp. 2024 - 2037 (2014)

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Ichikawa, M.; Hirano, T.; Enami, K.; Fuselier, T.; Kato, N.; Kwon, C.; Voigt, B.; Schulze-Lefert, P.; Baluska, F.; Sato, M. H.: Syntaxin of Plant Proteins SYP123 and SYP132 Mediate Root Hair Tip Growth in Arabidopsis thaliana. SI 55 (4), pp. 790 - 800 (2014)

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Ihnatowicz, A.; Siwinska, J.; Meharg, A. A.; Carey, M.; Koornneef, M.; Reymond, M.: Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures. New Phytologist 202 (4), pp. 1173 - 1183 (2014)

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Jasik, J.; Schmelzer, E.: Internalized and Newly Synthesized Arabidopsis PIN-FORMED2 Pass through Brefeldin A Compartments: A New Insight into Intracellular Dynamics of the Protein by Using the Photoconvertible Fluorescence Protein Dendra2 as a Tag. MOLECULAR PLANT 7 (10), pp. 1578 - 1581 (2014)

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Jiménez-Gómez, J. M.: Network types and their application in natural variation studies in plants. Current Opinion in Plant Biology 18, pp. 80 - 86 (2014)

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Joseph, M. P.; Papdi, C.; Kozma-Bognar, L.; Navi, I.; Lopez-Carbonell, M.; Rigo, G.; Koncz, C.; Szabados, L.: The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. PLANT PHYSIOLOGY 165 (3), pp. 1203 - 1220 (2014)

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Juraniec, M.; Lequeux, H.; Hermans, C.; Willems, G.; Nordborg, M.; Schneeberger, K.; Salis, P.; Vromant, M.; Lutts, S.; Verbruggen, N.: Towards the discovery of novel genetic component involved in stress resistance in Arabidopsis thaliana. New Phytologist 201 (3), pp. 810 - 824 (2014)

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Kalhorzadeh, P.; Hu, Z.; Cools, T.; Amiard, S.; Willing, E.-M.; De Winne, N.; Gevaert, K.; De Jaeger, G.; Schneeberger, K.; White, C. I. et al.; De Veylder, L.: Arabidopsis thaliana RNase H2 Deficiency Counteracts the Needs for the WEE1 Checkpoint Kinase but Triggers Genome Instability. The Plant Cell 26 (9), pp. 3680 - 3692 (2014)

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Kemen, E.: Microbe-microbe interactions determine oomycete and fungal host colonization. Current Opinion in Plant Biology 20, pp. 75 - 81 (2014)

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Kim, H.; O'Connell, R.; Maekawa-Yoshikawa, M.; Uemura, T.; Neumann, U.; Schulze-Lefert, P.: The powdery mildew resistance protein RPW8.2 is carried on VAMP721/722 vesicles to the extrahaustorial membrane of haustorial complexes. The Plant Journal 79 (5), pp. 835 - 847 (2014)

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Kim, J. Y.; Wu, J.; Kwon, S. J.; Oh, H.; Lee, S. E.; Kim, S. G.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Kang, K. Y. et al.; Ahn, I.-P.; Kim, B.-G.; Kim, S. T.: Proteomics of rice and Cochliobolus miyabeanus fungal interaction: Insight into proteins at intracellular and extracellular spaces. PROTEOMICS 14 (20), pp. 2307 - 2318 (2014)

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Kim, Y.; Tsuda, K.; Igarashi, D.; Hillmer, R. A.; Sakakibara, H.; Myers, C. L.; Katagiri, F.: Mechanisms Underlying Robustness and Tunability in a Plant Immune Signaling Network. CELL HOST & MICROBE 15 (1), pp. 84 - 94 (2014)

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Kopf, M.; Klähn, S.; Voss, B.; Stüber, K.; Huettel, B.; Reinhardt, R.; Hess, W. R.: Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714. Genome Announcements 2 (4), e00757-14 (2014)

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Journal Article

Kube, M.; Siewert, C.; Migdoll, A. M.; Duduk, B.; Holz, S.; Rabus, R.; Seemueller, E.; Mitrovic, J.; Mueller, I.; Buettner, C. et al.; Reinhardt, R.: Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'. Journal of Molecular Microbiology and Biotechnology 24 (1), pp. 19 - 36 (2014)

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Kungulovski, G.; Kycia, I.; Tamas, R.; Jurkowska, R. Z.; Kudithipudi, S.; Henry, C.; Reinhardt, R.; Labhart, P.; Jeltsch, A.: Application of histone modification-specific interaction domains as an alternative to antibodies. Genome Research 24 (11), pp. 1842 - 1853 (2014)

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Kunz, H.-H.; Zamani-Nour, S.; Häusler, R. E.; Ludewig, K.; Schroeder, J. I.; Malinova, I.; Fettke, J.; Flügge, U.-I.; Gierth, M.: Loss of Cytosolic Phosphoglucose Isomerase Affects Carbohydrate Metabolism in Leaves and Is Essential for Fertility of Arabidopsis. Plant Physiology 166, pp. 753 - 765 (2014)

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Liu, L.; Adrian, J.; Pankin, A.; Hu, J.; Dong, X.; von Korff, M.; Turck, F.: Induced and natural variation of promoter length modulates the photoperiodic response of FLOWERING LOCUS T. Nature Communications 5, 4558 (2014)

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Liu, L.; Farrona, S.; Klemme, S.; Turck, F.: Post-fertilization expression of FLOWERING LOCUS T suppresses reproductive reversion. Frontiers in Plant Science 5, 00164 (2014)

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Liu, L.; Zhang, J.; Adrian, J.; Gissot, L.; Coupland, G.; Diqiu, Y.; Turck, F.: Elevated Levels of MYB30 in the Phloem Accelerate Flowering in Arabidopsis through the Regulation of FLOWERING LOCUS T. PLoS One 9 (2), e89799 (2014)

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supplementary-material

Journal Article

Loehrer, M.; Vogel, A.; Huettel, B.; Reinhardt, R.; Benes, V.; Duplessis, S.; Usadel, B.; Schaffrath, U.: On the current status of Phakopsora pachyrhizi genome sequencing. Frontiers in Plant Science 5, 377 (2014)

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Maintz, J.; Cavdar, M.; Tamborski, J.; Kwaaitaal, M.; Huisman, R.; Meesters, C.; Kombrink, E.; Panstruga, R.: Comparative Analysis of MAMP-induced Calcium Influx in Arabidopsis Seedlings and Protoplasts. Plant and Cell Physiology 55 (10), pp. 1813 - 1825 (2014)

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Maximov, S.; Ott, V.; Belkoura, L.; Krämer, R.: Stimulus analysis of BetP activation under in vivo conditions. Biochimica et Biophysica Acta: BBA 1838, pp. 1288 - 1295 (2014)

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Meesters, C.; Möning, T.; Oeljeklaus, J.; Krahn, D.; Westfall, C. S.; Hause, B.; Jez, J. M.; Kaiser, M.; Kombrink, E.: A chemical inhibitor of jasmonate signaling targets JAR1 in Arabidopsis thaliana. Nature Chemical Biology 10, pp. 830 - 836 (2014)

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Meharg, C.; Khan, B.; Norton, G.; Deacon, C.; Johnson, D.; Reinhardt, R.; Huettel, B.; Meharg, A. A.: Trait-directed de novo population transcriptome dissects genetic regulation of a balanced polymorphism in phosphorus nutrition/arsenate tolerance in a wild grass, Holcus lanatus. New Phytologist 201, pp. 144 - 1554 (2014)

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Mine, A.; Sato, M.; Tsuda, K.: Toward a systems understanding of plant–microbe interactions. Frontiers in Plant Science 5, 423 (2014)

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Mueller, L. M.; von Korff, M.; Davis, S. J.: Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control. SI 65 (11), pp. 2915 - 2923 (2014)

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Nakamura, Y.; Andrés Lalaguna, F.; Kanehara, K.; Liu, Y. C.; Coupland, G.; Dörmann, P.: Diurnal and circadian expression profiles of glycerolipid biosynthetic genes in Arabidopsis. Plant Signaling & Behavior, e29715 (2014)

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Nakamura, Y.; Andrés Lalaguna, F.; Kanehara, K.; Liu, Y.-C.; Doermann, P.; Coupland, G.: Arabidopsis florigen FT binds to diurnally oscillating phospholipids that accelerate flowering. NATURE COMMUNICATIONS 5, 3553 (2014)

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Nakano, R. T.; Yamada, K.; Bednarek, P.; Nishimura, M.; Hara-Nishimura, I.: ER bodies in plants of the Brassicales order: biogenesis and association with innate immunity. Frontiers in Plant Science 5, 73 (2014)

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Nelson, A. D. L.; Forsythe, E. S.; Gan, X.; Tsiantis, M.; Beilstein, M. A.: Extending the model of Arabidopsis telomere length and composition across Brassicaceae. SI 22 (2), pp. 153 - 166 (2014)

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