Scientific Publications since 2002

Journal Article

Sun, M.; Schwalb, B.; Pirkl, N.; Maier, K. C.; Schenk, A.; Failmezger, H.; Tresch, A.; Cramer, P.: Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels. Molecular Cell 52 (1), pp. 52 - 62 (2013)

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Terecskei, K.; Tóth, R.; Gyula, P.; Kevei, E.; Bindics, J.; Coupland, G.; Nagy, F.; Kozma-Bognár, L.: The Circadian Clock-Associated Small GTPase LIGHT INSENSITIVE PERIOD1 Suppresses Light-Controlled Endoreplication and Affects Tolerance to Salt Stress in Arabidopsis. Plant Physiology 161, pp. 278 - 290 (2013)

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Tintor, N.; Ross, A.; Kanehara, K.; Yamada, K.; Fan, L.; Kemmerling, B.; Nuernberger, T.; Tsuda, K.; Saijo, Y.: Layered pattern receptor signaling via ethylene and endogenous elicitor peptides during Arabidopsis immunity to bacterial infection. Proceedings of the National Academy of Sciences of the United States of America 110 (15), pp. 6211 - 6216 (2013)

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Tomanov, K.; Hardtke, C.; Budhiraja, R.; Hermkes, R.; Coupland, G.; Bachmair, A.: Small Ubiquitin-Like Modifier Conjugating Enzyme with Active Site Mutation Acts as Dominant Negative Inhibitor of SUMO Conjugation in Arabidopsis. Journal of Integrative Plant Biology 55 (1), pp. 75 - 82 (2013)

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Tsuda, K.; Mine, A.; Bethke, G.; Igarashi, D.; Botanga, C. J.; Tsuda, Y.; Glazebrook, J.; Sato, M.; Katagiri, F.: Dual Regulation of Gene Expression Mediated by Extended MAPK Activation and Salicylic Acid Contributes to Robust Innate Immunity in Arabidopsis thaliana. PLOS GENETICS 9 (12), e1004015 (2013)

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Urbany, C.; Benke, A.; Marsian, J.; Huettel, B.; Reinhardt, R.; Stich, B.: Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17. BMC Plant Biology 13, 213 (2013)

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Vieira, F. A.; Thorne , M. A. S.; Stüber, K.; Darias, M.; Reinhardt, R.; Clark, M. S.; Gisbert, E.; Power, D. M.: Comparative analysis of a teleost skeleton transcriptome provides insight into its regulation. General and Comparative Endocrinology 191, pp. 45 - 58 (2013)

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Villamor, J. G.; Kaschani, F.; Colby, T.; Oeljeklaus, J.; Zhao, D.; Kaiser, M.; Patricelli, M. P.; Van der Hoorn, R. A. L.: Profiling protein kinases and other ATP binding proteins in Arabidopsis using Acyl-ATP probes. Molecular and Cellular Proteomics (12), pp. 2481 - 2496 (2013)

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Wabnik, K.; Robert, H. S.; Smith, R. S.; Friml, J.: Modeling Framework for the Establishment of the Apical-Basal Embryonic Axis in Plants. Current Biology 23 (24), pp. 2513 - 2518 (2013)

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Wagner, S.; Stuttmann, J.; Rietz, S.; Guerois, R.; Brunstein, E.; Bautor, J.; Niefind, K.; Parker, J. E.: Structural Basis for Signaling by Exclusive EDS1 Heteromeric Complexes with SAG101 or PAD4 in Plant Innate Immunity. CELL HOST & MICROBE 14 (6), pp. 619 - 630 (2013)

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Wang, G. -.; Miao, W.; Wang, J. -.; Ma, D. -.; Li, J. Q.; Chen, W. -.: Effects of Exogenous Abscisic Acid on Antioxidant System in Weedy and Cultivated Rice with Different Chilling Sensitivity under Chilling Stress. JOURNAL OF AGRONOMY AND CROP SCIENCE 199 (3), pp. 200 - 208 (2013)

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Wang, Z.; Cao, H.; Sun, Y.; Li, X.; Chen, F.; Carles, A.; Li, Y.; Ding, M.; Zhang, C.; Deng, X. et al.; Soppe, W. J. J.; Liu, Y.-X.: Arabidopsis Paired Amphipathic Helix Proteins SNL1 and SNL2 Redundantly Regulate Primary Seed Dormancy via Abscisic Acid-Ethylene Antagonism Mediated by Histone Deacetylation. The Plant Cell 25 (1), pp. 149 - 166 (2013)

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Wicker, T.; Oberhaensli, S.; Parlange, F.; Buchmann, J. P.; Shatalina, M.; Roffler, S.; Ben-David, R.; Dolezel, J.; Simkova, H.; Schulze-Lefert, P. et al.; Spanu, P. D.; Bruggmann, R.; Amselem, J.; Quesneville, H.; Ver Loren van Themaat, E.; Paape, T.; Shimizu, K. K.; Keller, B.: The wheat powdery mildew genome shows the unique evolution of an obligate biotroph. Nature Genetics 45 (9), pp. 1092 - + (2013)

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Wijnker, E.; James, G. V.; Ding, J.; Becker, F.; Klasen, J. R.; Rawat, V.; Rowan, B. A.; de Jong, D. F.; de Snoo, C. B.; Zapata, L. et al.; Huettel, B.; de Jong, H.; Ossowski, S.; Weigel, D.; Koornneef, M.; Keurentjes, J. J. B.; Schneeberger, K.: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. ELIFE 2, e01426 (2013)

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Willmann, M.; Gerlach, N.; Buer, B.; Polatajko, A.; Nagy, R.; Koebke, E.; Jansa, J.; Flisch, R.; Bucher, M.: Mycorrhizal phosphate uptake pathway in maize: vital for growth and cob development on nutrient poor agricultural and greenhouse soils. Frontiers in Plant Science 4, 533 (2013)

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Woehrmann, T.; de Barros Pinange, D. S.; Krapp, F.; Benko-Iseppon, A.-M.; Huettel, B.; Weising, K.: Development of 15 nuclear microsatellite markers in the genus Dyckia (Pitcairnioideae; Bromeliaceae) using 454 pyrosequencing. CONSERVATION GENETICS RESOURCES 5 (1), pp. 81 - 84 (2013)

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Xing, S.; Quodt, V.; Chandler, J.; Höhmann, S.; Berndtgen, R.; Huijser, P.: SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants, pp. 416 - 438 (2013)

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Xing, S.; Salinas, M.; Garcia-Molina, A.; Hohmann, S.; Berndtgen, R.; Huijser, P.: SPL8 and miR156-targeted SPL genes redundantly regulate Arabidopsis gynoecium differential patterning. PLANT JOURNAL 75 (4), pp. 566 - 577 (2013)

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Yamaguchi, N.; Wu, M.-F.; Winter, C. M.; Berns, M. C.; Nole-Wilson, S.; Yamaguchi, A.; Coupland, G.; Krizek, B. A.; Wagner, D.: A Molecular Framework for Auxin-Mediated Initiation of Flower Primordia. Developmental Cell 24 (3), pp. 271 - 282 (2013)

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Yang, C.; Bratzel, F.; Hohmann, N.; Koch, M.; Turck, F.; Calonje, M.: VAL- and AtBMI1-Mediated H2Aub Initiate the Switch from Embryonic to Postgerminative Growth in Arabidopsis. Current Biology 23 (14), pp. 1324 - 1329 (2013)

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Yun, H. S.; Kwaaitaal, M.; Kato, N.; Yi, C.; Park, S.; Sato, M. H.; Schulze-Lefert, P.; Kwon, C.: Requirement of vesicle-associated membrane protein 721 and 722 for sustained growth during immune responses in Arabidopsis. Molecules and Cells 35 (6), pp. 481 - 488 (2013)

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Zbierzak, A. M.; Porfirova, S.; Griebel, T.; Melzer, M.; Parker, J. E.; Doermann, P.: A TIR-NBS protein encoded by Arabidopsis Chilling Sensitive 1 (CHS1) limits chloroplast damage and cell death at low temperature. The Plant Journal 75 (4), pp. 539 - 552 (2013)

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Zech, H.; Hensler, M.; Kossmehl, S.; Drueppel, K.; Woehlbrand, L.; Trautwein, K.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K. et al.; Schomburg, D.; Rabus, R.: Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395. SI 13 (18-19), pp. 2869 - 2885 (2013)

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Zech, H.; Hensler, M.; Kossmehl, S.; Drueppel, K.; Woehlbrand, L.; Trautwein, K.; Hulsch, R.; Maschmann, U.; Colby, T.; Schmidt, J. et al.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients. SI 13 (18-19), pp. 2851 - 2868 (2013)

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Zhao, J.; Tian, Y.; Zhang, J.-S.; Zhao, M.; Gong, P.; Riss, S.; Saedler, R.; He, C.: The euAP1 Protein MPF3 Represses MPF2 to Specify Floral Calyx Identity and Displays Crucial Roles in Chinese Lantern Development in Physalis. The Plant Cell 25 (6), pp. 2002 - 2021 (2013)

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Zulet, A.; Gil-Monreal, M.; Villamor, J. G.; Zabalza, A.; Van der Hoorn, R. A. L.; Royuela, M.: Proteolytic Pathways Induced by Herbicides That Inhibit Amino Acid Biosynthesis. PLoS One 8 (9), e73847 (2013)

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post-print

Journal Article

Albani, M.; Castaings, L.; Woetzel, S.; Mateos, J. L.; Wunder, J.; Wang, R.; Reymond, M.; Coupland, G.: PEP1 of Arabis alpina Is Encoded by Two Overlapping Genes That Contribute to Natural Genetic Variation in Perennial Flowering. PLoS Genetics 8(12), e1003130 (2012)

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Alcázar, R.; Pecinka, A.; Aarts, M. G. M.; Fransz, P. F.; Koornneef, M.: Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology 15 (2), pp. 205 - 211 (2012)

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Andrés, F.; Coupland, G.: The genetic basis of flowering responses to seasonal cues. Nature Reviews Genetics 13 (9), pp. 627 - 639 (2012)

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Bagheri, H.; El-Soda, M.; van Oorschot, I.; Hanhart, C.; Bonnema, G.; Jansen-van den Bosch, T.; Mank, R.; Keurentjes, J.; Meng, L.; Wu, J. et al.; Koornneef, M.; Aarts, M. G. M.: Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population. Frontiers in Plant Genetics and Genomics 3, 00183 (2012)

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Bai, S.; Liu, J.; Chang, C.; Zhang, L.; Maekawa, T.; Wang, Q.; Xiao, W.; Liu, Y.; Chai, J.; Takken, F. L. W. et al.; Schulze-Lefert, P.; Shen, Q.-H.: Structure-Function Analysis of Barley NLR Immune Receptor MLA10 Reveals Its Cell Compartment Specific Activity in Cell Death and Disease Resistance. PLoS Pathogens 8 (6), doi:10.1371/journal.ppat.1002752 (2012)

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Bernal, M.; Casero, D.; Singh, V.; Wilson, G. T.; Grande, A.; Yang, H.; Dodani, S. C.; Pellegrini, M.; Huijser, P.; Connolly, E. L. et al.; Merchant, S. S.; Kraemer, U.: Transcriptome Sequencing Identifies SPL7-Regulated Copper Acquisition Genes FRO4/FRO5 and the Copper Dependence of Iron Homeostasis in Arabidopsis. Plant Cell 24 (2), pp. 738 - 761 (2012)

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Beutin, L.; Hammerl, J. A.; Strauch, E.; Reetz, J.; Dieckmann, R.; Kelner-Burgos, Y.; Martin, A.; Miko, A.; Strockbine, N. A.; Lindstedt, B. A. et al.; Horn, D.; Monse, H.; Huettel, B.; Mueller, I.; Stueber, K.; Reinhardt, R.: Spread of a Distinct Stx2-Encoding Phage Prototype among Escherichia coli O104:H4 Strains from Outbreaks in Germany, Norway, and Georgia. Journal of Virology 86 (19), pp. 10444 - 10455 (2012)

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Bhosale, S. U.; Stich, B.; Rattunde, H. F. W.; Weltzien, E.; Haussmann, B. I. G.; Hash, C. T.; Ramu, P.; Cuevas, H. E.; Paterson, A. H.; Melchinger, A. E. et al.; Parzies, H. K.: Association analysis of photoperiodic flowering time genes in west and central African sorghum [Sorghum bicolor (L.) Moench]. BMC Plant Biology 12, 32 (2012)

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Birkenbihl, R.; Diezel, C.; Somssich, I. E.: Arabidopsis WRKY33 Is a Key Transcriptional Regulator of Hormonal and Metabolic Responses toward Botrytis cinerea Infection. Plant Physiology 159 (1), pp. 266 - 285 (2012)

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Bulgarelli, D.; Rott, M.; Schlaeppi, K.; Ver Loren van Themaat, E.; Ahmadinejad, N.; Assenza, F.; Rauf, P.; Huettel, B.; Reinhardt, R.; Schmelzer, E. et al.; Peplies, J.; Gloeckner, F. O.; Amann, R.; Eickhorst, T.; Schulze-Lefert, P.: Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. NATURE 488 (7409), pp. 91 - 95 (2012)

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Buonocore, F.; Castro, R.; Randelli, E.; Lefranc, M.-P.; Six, A.; Kuhl, H.; Reinhardt, R.; Facchiano, A.; Boudinot, P.; Scapigliati, G.: Diversity, Molecular Characterization and Expression of T Cell Receptor gamma in a Teleost Fish, the Sea Bass (Dicentrarchus labrax, L). PLoS One 7 (10), e47957 (2012)

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Bus, A.; Hecht, J.; Huettel, B.; Reinhardt, R.; Stich, B.: High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing. BMC Genomics 13, 281 (2012)

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Journal Article

Campoli, C.; Drosse, B.; Searle, I.; Coupland, G.; von Korff, M.: Functional characterisation of HvCO1, the barley (Hordeum vulgare) flowering time ortholog of CONSTANS. The Plant Journal 69 (5), pp. 868 - 880 (2012)

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Campoli, C.; Shtaya, M.; Davis, S. J.; von Korff, M.: Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs. BMC Plant Biology 12, 97 (2012)

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Chao, Y.; Papenfort, K.; Reinhardt, R.; Sharma, C.M.; Vogel, J.: An atlas of Hfq-bound transcripts reveals 3 ' UTRs as a genomic reservoir of regulatory small RNAs. EMBO Journal 31 (20), pp. 4005 - 4019 (2012)

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Chitwood, D. H.; Headland, L. R.; Filiault, D. L.; Kumar , R.; Jiménez-Gómez, J. M.: Native Environment Modulates Leaf Size and Response to Simulated Foliar Shade across Wild Tomato Species. PLoS One 7 (1), e29570 (2012)

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Dam, B.; Dam, S.; Kube, M.; Reinhardt, R.; Liesack, W.: Complete Genome Sequence of Methylocystis sp Strain SC2, an Aerobic Methanotroph with High-Affinity Methane Oxidation Potential. Journal of Bacteriology (Washington, DC) 194 (21), pp. 6008 - 6009 (2012)

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Dam, B.; Kube, M.; Dam, S.; Reinhardt, R.; Liesack, W.: Complete Sequence Analysis of Two Methanotroph-Specific repABC-Containing Plasmids from Methylocystis sp Strain SC2. Applied and Environmental Microbiology 78 (12), pp. 4373 - 4379 (2012)

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de Meaux, J.; Pecinka, A.: The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2, pp. 142 - 144 (2012)

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Delgado-Cerezo, M.; Sánchez-Rodríguez, C.; Escudero, V.; Miedes, E.; Virginia Fernánde, P.; Jordá, L.; Hernández-Blanco, C.; Sánchez-Vallet, A.; Bednarek, P.; Schulze-Lefert, P. et al.; Somerville, S.; Estevez, J. M.; Persson, S.; Molina, A.: Arabidopsis heterotrimeric G protein regulates cell wall-mediated resistance to necrotrophic fungi. Molecular Plant 5, pp. 98 - 114 (2012)

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Dello Ioio, R.; Galinha, C.; Fletcher, A. G.; Grigg, S. P.; Molnar, A.; Willemsen, V.; Scheres, B.; Sabatini, S.; Baulcombe, D.; Maini, P. K. et al.; Tsiantis, M.: A PHABULOSA/Cytokinin Feedback Loop Controls Root Growth in Arabidopsis. Current Biology 22 (18), pp. 1699 - 1704 (2012)

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Diederich, M.; Hansmann, T.; Heinzmann, J.; Barg-Kues, B.; Herrmann, D.; Aldag, P.; Baulain, U.; Reinhardt, R.; Kues, W.; Weissgerber, C. et al.; Haaf, T.; Niemann, H.: DNA methylation and mRNA expression profiles in bovine oocytes derived from prepubertal and adult donors. (2012)

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Dong, X.; Reimer, J. J.; Goebel, U.; Engelhorn, J.; He, F.; Schoof, H.; Turck, F.: Natural variation of H3K27me3 distribution between two Arabidopsis accessions and its association with flanking transposable elements. Genome Biology 13, R117 (2012)

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External

Journal Article

Draffehn, A.; Durek, P.; Nunes-Nesi, A.; Stich, B.; Fernie, A.; Gebhardt, C.: Tapping natural variation at functional level reveals allele specific molecular characteristics of potato invertase Pain-1. Plant, Cell and Environment 35 (12), pp. 2143 - 2154 (2012)

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