Journal Article (2291)

Journal Article
Wu, J.; Lee, D. Y.; Wang, Y.; Kim, S. T.; Baek, S.-B.; Kim, S. G.; Kang, K. Y.: Protein profiles secreted from phylloplane of rice leaves free from cytosolic proteins: Application to study rice-Magnaporthe Oryzae interactions. Physiological and Molecular Plant Pathology 88, pp. 28 - 35 (2014)
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Xiang, Y.; Nakabayashi, K.; Ding, J.; He, F.; Bentsink, L.; Soppe, W. J. J.: REDUCED DORMANCY5 Encodes a Protein Phosphatase 2C That Is Required for Seed Dormancy in Arabidopsis. The Plant Cell 26 (11), pp. 4362 - 4375 (2014)
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Yoshida, S.; Barbier de Reuille, P.; Lane, B.; Bassel, G. W.; Prusinkiewicz, P.; Smith, R. S.; Weijers, D.: Genetic Control of Plant Development by Overriding a Geometric Division Rule. Developmental Cell 29 (1), pp. 75 - 87 (2014)
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Zacher, B.; Lidschreiber, M.; Cramer, P.; Gagneur, J.; Tresch, A.: Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. MOLECULAR SYSTEMS BIOLOGY 10 (12), 768 (2014)
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Zee, P. C.; Mendes-Soares, H.; Yu, Y.-T. N.; Kraemer, S. A.; Keller, H.; Ossowski, S.; Schneeberger, K.; Velicer, G. J.: A SHIFT FROM MAGNITUDE TO SIGN EPISTASIS DURING ADAPTIVE EVOLUTION OF A BACTERIAL SOCIAL TRAIT. EVOLUTION 68 (9), pp. 2701 - 2708 (2014)
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Zhang, B.; Tremousaygue, D.; Denance, N.; van Esse, H. P.; Hoerger, A. C.; Dabos, P.; Goffner, D.; Thomma, B. P. H. J.; Van der Hoorn, R. A. L.; Tuominen, H.: PIRIN2 stabilizes cysteine protease XCP2 and increases susceptibility to the vascular pathogen Ralstonia solanacearum in Arabidopsis. The Plant Journal 79 (6), pp. 1009 - 1019 (2014)
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Zhang, P.; Liu, X.; Tong, H.; Lu, Y.; Li, J. Q.: Association Mapping for Important Agronomic Traits in Core Collection of Rice (Oryza sativa L.) with SSR Markers. PLoS One 9 (10), e111508 (2014)
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Abdel-Ghani, A. H.; Frey, F. P.; Parzies, H. K.: Effect of temperature on the expression of cytoplasmic male sterility in cultivated barley (Hordeum vulgare L.). Plant Breeding 132 (1), pp. 42 - 47 (2013)
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Acevedo Garcia, J.; Collins, N. C.; Ahmadinejad, N.; Ma, L.; Houben, A.; Bednarek, P.; Benjdia, M.; Freialdenhoven, A.; Altmueller, J.; Nuernberg, P. et al.; Reinhardt, R.; Schulze-Lefert, P.; Panstruga, R.: Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 126 (12), pp. 2969 - 2982 (2013)
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Anwer, M. U.; Davis, S. J.: An overview of natural variation studies in the Arabidopsis thaliana circadian clock. Seminars in Cell & Developmental Biology 24 (5), pp. 422 - 429 (2013)
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Archacki, R.; Buszewicz, D.; Sarnowski, T. J.; Sarnowska, E.; Rolicka, A. T.; Tohge, T.; Fernie, A. R.; Jikumaru, Y.; Kotlinski, M.; Iwanicka-Nowicka, R. et al.; Kalisiak, K.; Patryn, J.; Halibart-Puzio, J.; Kamiya, Y.; Davis, S. J.; Koblowska, M. K.; Jerzmanowski, A.: BRAHMA ATPase of the SWI/SNF Chromatin Remodeling Complex Acts as a Positive Regulator of Gibberellin-Mediated Responses in Arabidopsis. PLoS One 8 (3), e58588 (2013)
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Barboza, L.; Effgen, S.; Alonso-Blanco, C.; Kooke, R.; Keurentjes, J. J. B.; Koornneef, M.; Alcázar, R.: Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. 15818 - 15823 (2013)
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Benke, A.; Urbany, C.; Marsian, J.; Rongli, S.; von Wiren, N.; Stich, B.: The genetic basis of natural variation for iron homeostasis in the maize IBM population. BMC Plant Biology 14 (12), doi:10.1186/1471-2229-14-12 (2013)
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Benstein, R. M.; Ludewig, K.; Wulfert, S.; Wittek, S.; Gigolashvili, T.; Frerigmann, H.; Gierth, M.; Flügge, U.-I.; Krüger, S.: Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis. The Plant Cell 25, pp. 5011 - 5029 (2013)
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Bergonzi, S.; Albani, M.; Ver Loren van Themaat, E.; Nordstroem, K.; Wang, R.; Schneeberger, K.; Moerland, P. D.; Coupland, G.: Mechanisms of Age-Dependent Response to Winter Temperature in Perennial Flowering of Arabis alpina. Science 340 (6136), pp. 1094 - 1097 (2013)
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Bujdoso, N.; Davis, S. J.: Mathematical modeling of an oscillating gene circuit to unravel the circadian clock network of Arabidopsis thaliana. Frontiers in Plant Science 4, 3 (2013)
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Campoli, C.; Pankin, A.; Drosse, B.; Casao, C. M.; Davis, S. J.; von Korff, M.: HvLUX1 is a candidate gene underlying the early maturity 10 locus in barley: phylogeny, diversity, and interactions with the circadian clock and photoperiodic pathways. New Phytologist 199 (4), pp. 1045 - 1059 (2013)
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Chang, C.; Yu, D.; Jiao, J.; Jing, S.; Schulze-Lefert, P.; Shen, Q.-H.: Barley MLA Immune Receptors Directly Interfere with Antagonistically Acting Transcription Factors to Initiate Disease Resistance Signaling. The Plant Cell 25 (3), pp. 1158 - 1173 (2013)
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Chitwood, D. H.; Kumar, R.; Headlanda, L. R.; Ranjan, A.; Covington, M. F.; Ichihashi, Y.; Fulop, D.; Jiménez-Gómez, J. M.; Peng, J.; Maloof, J. N. et al.; Sinha, R.: A Quantitative Genetic Basis for Leaf Morphology in a Set of Precisely Defined Tomato Introgression Lines. The Plant Cell 25 (7), pp. 2465 - 2481 (2013)
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Cromer, L.; Jolivet, S.; Horlow, C.; Chelysheva, L.; Heyman, J.; De Jaeger, G.; Koncz, C.; De Veylder, L.; Mercier, R.: Centromeric Cohesion Is Protected Twice at Meiosis, by SHUGOSHINs at Anaphase 1 and by PATRONUS at Interkinesis. Current Biology 23 (21), pp. 2090 - 2099 (2013)
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Debieu, M.; Tang, C.; Stich, B.; Sikosek, T.; Effgen, S.; Josephs, E.; Schmitt, J.; Nordborg, M.; Koornneef, M.; de Meaux, J.: Co-Variation between Seed Dormancy, Growth Rate and Flowering Time Changes with Latitude in Arabidopsis thaliana. PLOS ONE 8 (5), e61075 (2013)
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Delaunois, B.; Colby, T.; Belloy, N.; Conreux, A.; Harzen, A.; Baillieul, F.; Clement, C.; Schmidt, J.; Jeandet, P.; Cordelier, S.: Large-scale proteomic analysis of the grapevine leaf apoplastic fluid reveals mainly stress-related proteins and cell wall modifying enzymes. BMC PLANT BIOLOGY 13, 24 (2013)
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Draffehn, A.; Li, L.; Krezdorn, N.; Ding, J.; Luebeck, J.; Strahwald, J.; Muktar, M. S.; Walkemeier, B.; Rotter, B.; Gebhardt, C.: Comparative transcript profiling by SuperSAGE identifies novel candidate genes for controlling potato quantitative resistance to late blight not compromised by late maturity. FRONTIERS IN PLANT SCIENCE 4, 423 (2013)
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Dugar, G.; Herbig, A.; Förstner, K. U.; Heidrich, N.; Reinhardt, R.; Nieselt, K.; Sharma, C.: High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates. PLoS Genetics 9 (5), e1003495 (2013)
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Elrouby, N.; Villajuana Bonequi, M.; Porri, A.; Coupland, G.: Identification of Arabidopsis SUMO-interacting proteins that regulate chromatin activity and developmental transitions. Proceedings of the National Academy of Sciences of the United States of America 110 (49), pp. 19956 - 19961 (2013)
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Failmezger, H.; Froehlich, H.; Tresch, A.: Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinformatics 14, 292 (2013)
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post-print
Journal Article
Failmezger, H.; Jaegle, B.; Schrader, A.; Huelskamp, M.; Tresch, A.: Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images. PLoS Computational Biology 9 (4), e1003029 (2013)
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Failmezger, H.; Praveen, P.; Tresch, A.; Froehlich, H.: Learning gene network structure from time laps cell imaging in RNAi Knock downs. BIOINFORMATICS 29 (12), pp. 1534 - 1540 (2013)
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Falke, K. C.; Glander, S.; Fei, H.; Hu, J.; de Meaux, J.; Schmitz, G.: The spectrum of mutations controlling complex traits and the genetics of fitness in plants. Current Opinion in Genetics & Development 23 (6), pp. 665 - 671 (2013)
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Fischer, M.; Schreiber, L. K.; Colby, T.; Kuckenberg, M.; Tacke, E.; Hofferbert, H.-R.; Schmidt, J.; Gebhardt, C.: Novel candidate genes influencing natural variation in potato tuber cold sweetening identified by comparative proteomics and association mapping. BMC Plant Biology 13, 113 (2013)
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Fournier-Level, A.; Wilczek, A. M.; Cooper, M. D.; Roe, J. L.; Anderson, J.; Eaton, D.; Moyers, B. T.; Petipas, R. H.; Schaeffer, R. N.; Pieper, B. et al.; Reymond, M.; Koornneef, M.; Welch, S. M.; Remington, D. L.; Schmitt, J.: Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Molecular Ecology 22 (13), pp. 3552 - 3566 (2013)
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Gan, P.; Ikeda, K.; Irieda, H.; Narusaka, M.; O'Connell, R. J.; Narusaka, Y.; Takano, Y.; Kubo, Y.; Shirasu, K.: Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi. New Phytologist 197 (4), pp. 1236 - 1249 (2013)
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Garcia-Molina, A.; Andres-Colas, N.; Perea-Garcia, A.; Neumann, U.; Dodani, S. C.; Huijser, P.; Penarrubia, L.; Puig, S.: The Arabidopsis COPT6 Transport Protein Functions in Copper Distribution Under Copper-Deficient Conditions. Plant and Cell Physiology 54 (8), pp. 1378 - 1390 (2013)
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Gebhardt, C.: Bridging the gap between genome analysis and precision breeding in potato. Trends in Genetics 29 (4), pp. 248 - 256 (2013)
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Giska, F.; Lichocka, M.; Piechocki, M.; Dadlez, M.; Schmelzer, E.; Hennig, J.; Krzymowska, M.: Phosphorylation of HopQ1, a Type III Effector from Pseudomonas syringae, Creates a Binding Site for Host 14-3-3 Proteins. Plant Physiology 161 (4), pp. 2049 - 2061 (2013)
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Goremykin, V. V.; Nikiforova, S. V.; Biggs, P. J.; Zhong, B.; Delange, P.; Martin, W.; Woetzel, S.; Atherton, R. A.; Mclenachan, P. A.; Lockhart, P. J.: The Evolutionary Root of Flowering Plants. Systematic Biology 62 (1), pp. 50 - 61 (2013)
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Gratkowska, D. M.; Rolicka, A. T.; Bucior, E.; Sarnowska, E.; Sacharowski, S. P.; Koncz, C.; Jerzmanowski, A.; Sarnowski, T. J.: The SWI/SNF complex in Arabidopsis responds to environmental changes in temperature - dependent manner. FEBS JOURNAL 280, pp. 517 - 518 (2013)
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Gregis, V.; Andrés Lalaguna, F.; Sessa, A.; Guerra, R. F.; Simonini, S.; Mateos, J. L.; Torti, S.; Zambelli, F.; Prazzoli, G. M.; Bjerkan, K. N. et al.; Grini, P. E.; Pavesi, G.; Colombo, L.; Coupland, G.; Kater, M. M.: Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis. Genome Biology 14 (6), R56 (2013)
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Gruner, K.; Griebel, T.; Navarova, H.; Attaran, E.; Zeier, J.: Reprogramming of plants during systemic acquired resistance. FRONTIERS IN PLANT SCIENCE 4, 252 (2013)
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Gu, C.; Shannon, D. A.; Colby, T.; Wang, Z.; Shabab, M.; Kumari, S.; Villamor, J. G.; McLaughlin , C. J.; Weerapana , E.; Kaiser, M. et al.; Cravatt, B. F.; Van der Hoorn, R. A. L.: Chemical Proteomics with Sulfonyl Fluoride Probes Reveals Selective Labeling of Functional Tyrosines in Glutathione Transferases. Cell 20 (4), pp. 541 - 548 (2013)
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Gueye, M.; Kantoussan, J.; Tine, M.: The impact of environmental degradation on reproduction of the black-chinned tilapia Sarotherodon melanotheron from various coastal marine, estuarine and freshwater habitats. Comptes Rendus Biologies 336 (7), pp. 342 - 353 (2013)
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Hacquard, S.; Kracher, B.; Maekawa, T.; Vernaldi, S.; Schulze-Lefert, P.; Ver Loren van Themaat, E.: Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts. Proceedings of the National Academy of Sciences of the United States of America 110 (24), pp. E2219 - E2228 (2013)
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Hajheidrai, M.; Koncz, C.; Eick, D.: Emerging roles for RNA polymerase II CTD in Arabidopsis. Trends in Plant Science 18 (11), pp. 633 - 643 (2013)
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Heidrich, K.; Tsuda, K.; Blanvillain-Baufumé, S.; Wirthmueller, L.; Bautor, J.; Parker, J. E.: Arabidopsis TNL-WRKY domain receptor RRS1 contributes to temperature-conditioned RPS4 auto-immunity. Frontiers in Plant Science 4, 403 (2013)
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Hoerger, A. C.; Van der Hoorn, R. A. L.: The structural basis of specific protease-inhibitor interactions at the plant-pathogen interface. Current Opinion in Structural Biology 23 (6), pp. 842 - 850 (2013)
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Horn, F.; Habekuss, A.; Stich, B.: Natural variation for BYDV resistance in maize. Maydica 58 (2), pp. 173 - 181 (2013)
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Hoser, R.; Zurczak, M.; Lichocka, M.; Zuzga, S.; Dadlez, M.; Samuel, M. A.; Ellis, B. E.; Stuttmann, J.; Parker, J. E.; Hennig, J. et al.; Krzymowska, M.: Nucleocytoplasmic partitioning of tobacco N receptor is modulated by SGT1. New Phytologist 200 (1), pp. 158 - 171 (2013)
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Huang, X.; Ding, J.; Effgen, S.; Turck, F.; Koornneef, M.: Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytologist 199 (3), pp. 843 - 857 (2013)
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Ilyas, S.; Ilyas, M.; Van der Hoorn, R. A. L.; Mathur, S.: Selective Conjugation of Proteins by Mining Active Proteomes through Click-Functionalized Magnetic Nanoparticles. ACS NANO 7 (11), pp. 9655 - 9663 (2013)
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Jacob, F.; Vernaldi, S.; Maekawa, T.: Evolution and conservation of plant NLR functions. Frontiers in immunology, 297 (2013)
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