Scientific Publications since 2002

Journal Article

Weber, B.; Zicola, J.; Oka, R.; Stam, M.: Plant Enhancers: A Call for Discovery. Trends in Plant Science 21, pp. 974 - 987 (2016)

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Wehrens, R.; Hageman, J. A.; van Eeuwijk, F.; Kooke, R.; Flood, P.; Wijnker, E.; Keurentjes, J. J. B.; Lommen, A.; van Eekelen, H. D. L. M.; Hall, R. D. et al.; Mumm, R.; de Vos, R. C. H.: Improved batch correction in untargeted MS-based metabolomics. Metabolomics 12 (5), 88 (2016)

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Weiher, H.; Haymo, P.; Jansen-Dürr, P.; Hegenbarth, S.; Knolle, P.; Grunau, S.; Vapola, M.; Kalervo Hitunen, J.; Zwacka, R. M.; Schmelzer, E. et al.; Reumann, K.; Will, H.: Weiher H, Pircher H, Jansen-Dürr P, et al. A monoclonal antibody raised against bacterially expressed MPV17 sequences shows peroxisomal, endosomal and lysosomal localisation in U2OS cells. BMC Research Notes. 2016;9:128. doi:10.1186/s13104-016-1939-0. BMC Research Notes 9, 128 (2016)

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Weimer, A. K.; Biedermann, S.; Harashima, H.; Roodbarkelari, F.; Takahashi, N.; Foreman, J.; Guan, Y.; Pochon, G.; Heese, M.; Van Damme, D. et al.; Sugimoto, K.; Koncz, C.; Doerner, P.; Umeda, M.; Schnittger, A.: The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis. EMBO JOURNAL 35 (19), pp. 2068 - 2086 (2016)

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Westermann, A. J.; Foerstner, K. U.; Amman, F.; Barquist, L.; Chao, Y.; Schulte, L. N.; Mueller, L.; Reinhardt, R.; Stadler, P. F.; Vogel, J.: Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529 (7587), pp. 496 - + (2016)

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Willing, E.-M.; Piofczyk, T. P.; Albert, A.; Winkler, J. B.; Schneeberger, K.; Pecinka, A.: UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana. Nature Communications 7, 13522 (2016)

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Woehrmann, T.; Huettel, B.; Wagner, N.; Weising, K.: MICROSATELLITES FROM FOSTERELLA CHRISTOPHII (BROMELIACEAE) BY DE NOVO TRANSCRIPTOME SEQUENCING ON THE PACIFIC BIOSCIENCES RS PLATFORM. Applications in Plant Sciences 4 (1), 1500084 (2016)

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Wu, J.; Kim, S. G.; Kang, K. Y.; Kim, J.-G.; Park, S.-R.l.; Gupta, R.; Kim, Y. H.; Wang, Y.; Kim, S. T.: Overexpression of a Pathogenesis-Related Protein 10 Enhances Biotic and Abiotic Stress Tolerance in Rice. Plant Pathology Journal 32 (6), pp. 552 - 562 (2016)

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Wu, J.; Wang, Y.; Park, S.-Y.; Kim, S. G.; Yoo, J. S.; Park, S.; Gupta, R.; Kang, K. Y.; Kim, S. T.: Secreted Alpha-N-Arabinofuranosidase B Protein Is Required for the Full Virulence of Magnaporthe oryzae and Triggers Host Defences. PLoS One 11 (10), e0165149 (2016)

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Xiang, Y.; Song, B.; Née, G.; Kramer, K.; Finkemeier, I.; Soppe, W.: Sequence Polymorphisms at the REDUCED DORMANCY5 Pseudophosphatase Underlie Natural Variation in Arabidopsis Dormancy. Plant Physiology 171 (4), pp. 2659 - 2670 (2016)

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Yamada, K.; Yamaguchi, K.; Shirakawa, T.; Nakagami, H.; Mine, A.; Ishikawa, K.; Fujiwara, M.; Narusaka, M.; Narusaka, Y.; Ichimura, K. et al.; Kobayashi, Y.; Matsui, H.; Nomura, Y.; Nomoto, M.; Tada, Y.; Fukao, Y.; Fukamizo, T.; Tsuda, K.; Shirasu, K.; Shibuya, N.; Kawasaki, T.: The Arabidopsis CERK1-associated kinase PBL27 connects chitin perception to MAPK activation. EMBO Journal 35 (22), pp. 2468 - 2483 (2016)

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Yamada, K.; Yamashita-Yamada, M.; Hirase, T.; Fujiwara, T.; Tsuda, K.; Hiruma, K.; Saijo, Y.: Danger peptide receptor signaling in plants ensures basal immunity upon pathogen-induced depletion of BAK1. EMBO Journal 35 (1), pp. 46 - 61 (2016)

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Zadnikova, P.; Wabnik, K.; Abuzeineh, A.; Gallemi, M.; Van Der Straeten, D.; Smith, R. S.; Inze, D.; Friml, J.; Prusinkiewicz, P.; Benkova, E.: A Model of Differential Growth-Guided Apical Hook Formation in Plants. Plant Cell 28 (10), pp. 2464 - 2477 (2016)

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Zapata, L.; Ding, J.; Willing, E.-M.; Hartwig, B.; Bezdan, D.; Jiao, W.-B.; Patel, V.; James, G. V.; Koornneef, M.; Ossowski, S. et al.; Schneeberger, K.: Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proceedings of the National Academy of Sciences of the United States of America 113 (28), pp. E4052 - E4060 (2016)

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Zgadzaj, R. L.; Garrido Oter, R.; Jensen, D. B.; Koprivova, A.; Schulze-Lefert, P.; Radutoiu, S.: Root nodule symbiosis in Lotus japonicus drives the establishment of distinctive rhizosphere, root, and nodule bacterial communities. Proceedings of the National Academy of Sciences of the United States of America PNAS, Proceedings of the National Academy of Sciences 113 (49), pp. E7996 - E8005 (2016)

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Zhang, P.; Zhong, K.; Tong, H.; Shahid, M. Q.; Li, J.: Association Mapping for Aluminum Tolerance in a Core Collection of Rice Landraces. Frontiers in Plant Science 7, 1415 (2016)

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Zhou, Y.; Hartwig, B.; James, G. V.; Schneeberger, K.; Turck, F.: Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes. Plant Cell 28 (1), pp. 87 - 101 (2016)

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Andrés, F. L.; Romera Branchat, M.; Martinez-Gallegos, R.; Patel, V.; Schneeberger, K.; Jang, S.; Altmuller, J.; Nurnberg, P.; Coupland, G.: Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant physiology 169 (3), pp. 2187 - 99 (2015)

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Bai, Y.; Mueller, D. B.; Srinivas, G.; Garrido Oter, R.; Potthoff, E.; Rott, M.; Dombrowski, N.; Muench, P. C.; Spaepen, S.; Remus-Emsermann, M. et al.; Huettel, B.; McHardy, A. C.; Vorholt, J. A.; Schulze-Lefert, P.: Functional overlap of the Arabidopsis leaf and root microbiota. Nature 528 (7582), pp. 364 - 369 (2015)

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Baranauske, S.; Mickute, M.; Plotnikova, A.; Finke, A.; Venclovas, C.; Klimasauskas, S.; Vilkaitis, G.: Functional mapping of the plant small RNA methyltransferase: HEN1 physically interacts with HYL1 and DICER-LIKE 1 proteins. Nucleic Acids Research (London) 43 (5), pp. 2802 - 2812 (2015)

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Barbier de Reuille, P.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Bassel, G. W.; Schuepbach, T.; Tauriello, G.; Bajpai, N.; Strauss, S.; Weber, A.; Kiss, A. et al.; Burian, A.; Hofhuis, H.; Sapala, A.; Lipowczan, M.; Heimlicher, M. B.; Robinson, S.; Bayer, E. M.; Basler, K.; Koumoutsakos, P.; Roeder, A. H. K.; Aegerter-Wilmsen, T.; Nakayama, N.; Tsiantis, M.; Hay, A.; Kwiatkowska, D.; Xenarios, I.; Kuhlemeier, C.; Smith, R. S.: MorphoGraphX: A platform for quantifying morphogenesis in 4D. ELIFE 4, e05864 (2015)

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Barboza Barquero, L.; Nagel, K.A.; Jansen , M.; Klasen, J. R.; Kastenholz, B.; Braun, S.; Bleise, B.; Brehm, T.; Koornneef, M.; Fiorani, F.: Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water limiting conditions is independent from the GA5 loss-of-function alleles. Annals of Botany (116), pp. 321 - 331 (2015)

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Benke, A.; Urbany, C.; Stich, B.: Genome-wide association mapping of iron homeostasis in the maize association population. BMC GENETICS 16, 1 (2015)

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Bours, R.; Kohlen, W.; Bouwmeester, H. J.; van der Krol, A.: Thermoperiodic Control of Hypocotyl Elongation Depends on Auxin-Induced Ethylene Signaling That Controls Downstream PHYTOCHROME INTERACTING FACTOR3 Activity. Plant Physiology 167 (2), pp. 517 - 530 (2015)

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Bratzel, F.; Turck, F.: Molecular memories in the regulation of seasonal flowering: from competence to cessation. Genome Biology 16 (16), 192 (2015)

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Brockington, S. F.; Moyroud, E.; Sayou, C.; Monniaux, M.; Nanao, M. H.; Thevenon, E.; Chahtane, H.; Warthmann, N.; Melkonian, M.; Zhang, Y. et al.; Wong, G. K.-S.; Weigel, D.; Dumas, R.; Parcy, F.: EVOLUTION Response to Comment on "A promiscuous intermediate underlies the evolution of LEAFY DNA binding specificity". SCIENCE 347 (347), p. 621 - 621 (2015)

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Bühler, J.; Rishmawi, L.; Pflugfelder, D.; Huber, G.; Scharr, H.; Hülskamp, M.; Koornneef, M.; Schurr, U.; Jahnke, S.: phenoVein - A tool for leaf vein segmentation and analysis. Plant Physiology 169 (4), pp. 2359 - 2370 (2015)

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Bulgarelli, D.; Garrido Oter, R.; Muench, P. C.; Weiman, A.; Droege, J.; Pan, Y.; McHardy, A. C.; Schulze-Lefert, P.: Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley. Cell Host & Microbe 17 (3), pp. 392 - 403 (2015)

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Cai, N.; Bigdeli, T. B.; Kretzschmar, W.; Li, Y.; Liang, J.; Song, L.; Hu, J.; Li, Q.; Jin, W.; Hu, Z. et al.; Wang, G.; Wang, L.; Qian, P.; Liu, Y.; Jiang, T.; Lu, Y.; Zhang, X.; Yin, Y.; Li, Y.; Xu, X.; Gao, J.; Reimers, M.; Webb, T.; Riley, B.; Bacanu, S.; Peterson, R. E.; Chen, Y.; Zhong, H.; Liu, Z.; Wang, G.; Sun, J.; Sang, H.; Jiang, G.; Zhou, X.; Li, Y.; Li, Y.; Zhang, W.; Wang, X.; Fang, X.; Pan, R.; Miao, G.; Zhang, Q.; Hu, J.; Yu, F.; Du, B.; Sang, W.; Li, K.; Chen, G.; Cai, M.; Yang, L.; Yang, D.; Ha, B.; Hong, X.; Deng, H.; Li, G.; Li, K.; Song, Y.; Gao, S.; Zhang, J.; Gan, Z.; Meng, H.; Pan, J.; Gao, C.; Zhang, K.; Sun, N.; Li, Y.; Niu, Q.; Zhang, Y.; Liu, T.; Hu, C.; Zhang, Z.; Lv, L.; Dong, J.; Wang, X.; Tao, M.; Wang, X.; Xia, J.; Rong, H.; He, Q.; Liu, T.; Huang, G.; Mei, Q.; Shen, Z.; Liu, Y.; Shen, J.; Tian, T.; Liu, X.; Wu, W.; Gu, D.; Fu, G.; Shi, J.; Chen, Y.; Gan, X.; Liu, L.; Wang, L.; Yang, F.; Cong, E.; Marchini, J.; Yang, H.; Wang, J.; Shi, S.; Mott, R.; Xu, Q.; Wang, J.; Kendler, K. S.; Flint, J.: Sparse whole-genome sequencing identifies two loci for major depressive disorder. Nature 523 (7562), pp. 588 - 591 (2015)

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Cai, N.; Chang, S.; Li, Y.; Li, Q.; Hu, J.; Liang, J.; Song, L.; Kretzschmar, W.; Gan, X.; Nicod, J. et al.; Rivera, M.; Deng, H.; Du, B.; Li, K.; Sang, W.; Gao, J.; Gao, S.; Ha, B.; Ho, H.-Y.; Hu, C.; Hu, J.; Hu, Z.; Huang, G.; Jiang, G.; Jiang, T.; Jin, W.; Li, G.; Li, K.; Li, Y.; Li, Y.; Li, Y.; Lin, Y.-T.; Liu, L.; Liu, T.; Liu, Y.; Liu, Y.; Lu, Y.; Lv, L.; Meng, H.; Qian, P.; Sang, H.; Shen, J.; Shi, J.; Sun, J.; Tao, M.; Wang, G.; Wang, G.; Wang, J.; Wang, L.; Wang, X.; Wang, X.; Yang, H.; Yang, L.; Yin, Y.; Zhang, J.; Zhang, K.; Sun, N.; Zhang, W.; Zhang, X.; Zhang, Z.; Zhong, H.; Breen, G.; Wang, J.; Marchini, J.; Chen, Y.; Xu, Q.; Xu, X.; Mott, R.; Huang, G.-J.; Kendler, K.; Flintl, J.: Molecular Signatures of Major Depression. CURRENT BIOLOGY 25 (9), pp. 1146 - 1156 (2015)

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Cao, H. X.; Schmutzer, T.; Scholz, U.; Pecinka, A.; Schubert, I.; Vu, G. T. H.: Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology 6, 526 (2015)

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Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)

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Cui, H.; Tsuda, K.; Parker, J. E.: Effector-Triggered Immunity: From Pathogen Perception to Robust Defense. ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66, pp. 487 - 511 (2015)

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de Montaigu, A.; Giakountis, A.; Rubin, M.; Toth, R.; Cremer, F.; Sokolova, V.; Porri, A.; Reymond, M.; Weinig, C.; Coupland, G.: Natural diversity in daily rhythms of gene expression contributes to phenotypic variation. Proceedings of the National Academy of Sciences of the United States of America 112 (3), pp. 905 - 910 (2015)

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Delaplace, P.; Delory, B. M.; Baudson, C.; de Cazenave, M. M.-S.; Spaepen, S.; Varin, S.; Brostaux, Y.; du Jardin, P.: Influence of rhizobacterial volatiles on the root system architecture and the production and allocation of biomass in the model grass Brachypodium distachyon (L.) P. Beauv. BMC Plant Biology 15, 195 (2015)

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Deng, W.; Clausen, J.; Boden, S.; Oliver, S. N.; Casao, C. M.; Ford, B.; Anderssen, R. S.; Trevaskis, B.: Dawn and Dusk Set States of the Circadian Oscillator in Sprouting Barley (Hordeum vulgare) Seedlings. PLoS One 10 (6), e0129781 (2015)

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Digel, B.; Pankin, A.; von Korff, M.: Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley. The Plant cell 27 (9), pp. 2318 - 34 (2015)

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El-Soda, M.; Kruijer, W.; Malosetti, M.; Koornneef, M.; Aarts, M. G. M.: Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought. Plant, Cell and Environment 38 (3), pp. 585 - 599 (2015)

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Fischer, M.; Kuckenberg, M.; Kastilan, R.; Muth, J.; Gebhardt, C.: Novel in vitro inhibitory functions of potato tuber proteinaceous inhibitors. Molecular Genetics and Genomics 290 (1), pp. 387 - 398 (2015)

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Fornara, F.; de Montaigu, A.; Sánchez Villarreal, A.; Takahashi, Y.; Ver Loren van Themaat, E.; Huettel, B.; Davis, S. J.; Coupland, G.: The GI-CDF module of Arabidopsis affects freezing tolerance and growth as well as flowering. The Plant Journal 81 (5), pp. 695 - 706 (2015)

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Frey, F. P.; Urbany, C.; Huettel, B.; Reinhardt, R.; Stich, B.: Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress. BMC Genomics 16, 123 (2015)

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Gonzalez-Rodriguez, V. E.; Lineiro, E.; Colby, T.; Harzen, A.; Garrido, C.; Manuel Cantoral, J.; Schmidt, J.; Javier Fernandez-Acero, F.: Proteomic profiling of Botrytis cinerea conidial germination. Archives of Microbiology 197 (2), pp. 117 - 133 (2015)

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Gupta, R.; Lee, S. E.; Agrawal, G. K.; Rakwal, R.; Park, S.; Wang, Y.; Kim, S. T.: Understanding the plant-pathogen interactions in the context of proteomics-generated apoplastic proteins inventory. Frontiers in Plant Science 6, 352 (2015)

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Gupta, R.; Min, C. W.; Kim, S. W.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Kim, S. G.; Lee, B. W.; Ko, J. M.; Baek, I. Y. et al.; Bae, D. W.; Kim, S. T.: Comparative investigation of seed coats of brown-versus yellow-colored soybean seeds using an integrated proteomics and metabolomics approach. SI 15 (10), pp. 1706 - 1716 (2015)

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Gupta, R.; Wang, Y.; Agrawal, G. K.; Rakwal, R.; Jo, I. H.; Bang, K. H.; Kim, S. T.: Time to dig deep into the plant proteome: a hunt for low-abundance proteins. Frontiers in Plant Science 6, 00022 (2015)

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Gutjahr, C.; Gobbato, E.; Choi, J.; Riemann, M.; Johnston, M. G.; Summers, W.; Carbonnel, S.; Mansfield, C.; Yang, S.-Y.; Nadal, M. et al.; Acosta, I.; Takano, M.; Jiao, W.-B.; Schneeberger, K.; Kelly, K. A.; Paszkowski, U.: Rice perception of symbiotic arbuscular mycorrhizal fungi requires the karrikin receptor complex. Science Magazine 350 (6267), pp. 1521 - 1524 (2015)

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Hacquard, S.; Garrido Oter, R.; González, A.; Spaepen, S.; Ackermann, G.; Lebeis, S.; McHardy, A. C.; Dangl, J. L.; Knight, R.; Ley, R. et al.; Schulze-Lefert, P.: Microbiota and Host Nutrition across Plant and Animal Kingdoms. Cell Host & Microbe 17 (5), pp. 603 - 613 (2015)

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Hacquard, S.; Schadt, C. W.: Towards a holistic understanding of the beneficial interactions across the Populus microbiome. New Phytologist, Special Issue 205 (4), pp. 1424 - 1430 (2015)

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Hagmann, J.; Becker, C.; Mueller, J.; Stegle, O.; Meyer, R. C.; Wang, G.; Schneeberger, K.; Fitz, J.; Altmann, T.; Bergelson, J. et al.; Borgwardt, K.; Weigel, D.: Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage. PLOS GENETICS 11 (1), e1004920 (2015)

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Halder, V.; Kombrink, E.: Facile high-throughput forward chemical genetic screening by in situ monitoring of glucuronidase-based reporter gene expression in Arabidopsis thaliana. Frontiers in Plant Science 6, 13 (2015)

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