Scientific Publications since 2002

Journal Article

Rossmann, S.; Kohlen, W.; Hasson, A.; Theres, K.: Lateral suppressor and Goblet act in hierarchical order to regulate ectopic meristem formation at the base of tomato leaflets. The Plant Journal 81 (6), pp. 837 - 848 (2015)

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Rousselle, Y.; Jones, E.; Charcosset, A.; Moreau, P.; Robbins, K.; Stich, B.; Knaak, C.; Flament, P.; Karaman, Z.; Martinant, J.-P. et al.; Fourneau, M.; Taillardat, A.; Romestant, M.; Tabel, C.; Bertran, J.; Ranc, N.; Lespinasse, D.; Blanchard, P.; Kahler, A.; Chen, J.; Kahler, J.; Dobrin, S.; Warner, T.; Ferris, R.; Smith, S.: Study on Essential Derivation in Maize: III. Selection and Evaluation of a Panel of Single Nucleotide Polymorphism Loci for Use in European and North American Germplasm. Crop Science 55 (3), pp. 1170 - 1180 (2015)

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Rowan, B. A.; Patel, V.; Weigel, D.; Schneeberger, K.: Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping. G3-GENES GENOMES GENETICS 5 (3), pp. 385 - 398 (2015)

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Sacharowski, S.; Gratkowska, D. M.; Sarnowska, E. A.; Kondrak, P.; Jancewicz, I.; Porri, A.; Bucior, E.; Rolicka, A. T.; Franzen, R.; Kowalczyk, J. et al.; Pawlikowska, K.; Huettel, B.; Torti, S.; Schmelzer, E.; Coupland, G.; Jerzmanowski, A.; Koncz, C.; Sarnowski, T. J.: SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. PLANT CELL 27 (7), pp. 1889 - 1906 (2015)

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Sanetomo, R.; Gebhardt, C.: Cytoplasmic genome types of European potatoes and their effects on complex agronomic traits. BMC Plant Biology 15, 162 (2015)

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Sanz-Luque, E.; Ocana-Calahorro, F.; de Montaigu, A.; Chamizo-Ampudia, A.; Llamas, A.; Galvan, A.; Fernandez, E.: THB1, a truncated hemoglobin, modulates nitric oxide levels and nitrate reductase activity. The Plant Journal 81 (3), pp. 467 - 479 (2015)

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Sarid-Krebs, L.; Panigrahi, K. C. S.; Fornara, F.; Takahashi, Y.; Hayama, R.; Jang, S.; Tilmes, V.; Valverde, F.; Coupland, G.: Phosphorylation of CONSTANS and its COP1-dependent degradation during photoperiodic flowering of Arabidopsis. The Plant journal: for cell and molecular biology 84 (3), pp. 451 - 63 (2015)

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Serrano, M.; Kombrink, E.; Meesters, C.: Considerations for designing chemical screening strategies in plant biology. Frontiers in Plant Science 6, 131 (2015)

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Sharma, R.; Xia, X.; Cano, L. M.; Evangelisti, E.; Kemen, E.; Judelson, H.; Oome, S.; Sambles, C.; van den Hoogen, D. J.; Kitner, M. et al.; Klein, J.; Meijer, H. J. G.; Spring, O.; Win, J.; Zipper, R.; Bode, H. B.; Govers, F.; Kamoun, S.; Schornack, S.; Studholme, D. J.; Van den Ackerveken, G.; Thines, M.: Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics 16, 741 (2015)

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Simon, S.; Rühl, M.; de Montaigu, A.; Woetzel, S.; Coupland, G.: Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae. Molecular Biology and Evolution, 10.1093/molbev/msv110 (2015)

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Sreekanta, S.; Bethke, G.; Hatsugai, N.; Tsuda, K.; Thao, A.; Wang, L.; Katagiri, F.; Glazebrook, J.: The Receptor-Like Cytoplasmic Kinase PCRK1 Contributes to Pattern-Triggered Immunity against Pseudomonas syringae in Arabidopsis thaliana. New Phytologist 207 (1), pp. 78 - 90 (2015)

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Sun, H.-Q.; Schneeberger, K.: SHOREmap v3.0: fast and accurate identification of causal mutations from forward genetic screens. Methods in molecular biology (Clifton, N.J.) 1284, pp. 381 - 95 (2015)

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Tauriello, G.; Meyer, H. M.; Smith, R. S.; Koumoutsakos, P.; Roeder, A. H. K.: Variability and Constancy in Cellular Growth of Arabidopsis Sepals. Plant Physiology 169 (4), pp. 2342 - 2358 (2015)

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Ting, H.-M.; Delatte, T. L.; Kolkman, P.; Misas-Villamil, J.; Van der Hoorn, R. A. L.; Bouwmeester, H. J.; van der Krol, A. R.: SNARE-RNAi Results in Higher Terpene Emission from Ectopically Expressed Caryophyllene Synthase in Nicotiana benthamiana. Molecular Plant 8 (3), pp. 454 - 466 (2015)

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Torang, P.; Wunder, J.; Obeso, J. R.; Herzog, M.; Coupland, G.; Agren, J.: Large-scale adaptive differentiation in the alpine perennial herb Arabis alpina. New Phytologist 206 (1), pp. 459 - 470 (2015)

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Tsuda, K.; Somssich, I. E.: Transcriptional networks in plant immunity. New Phytologist 206 (3), pp. 932 - 947 (2015)

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Vu, G. T. H.; Schmutzer, T.; Bull, F.; Cao, H. X.; Fuchs, J.; Tran, T. D.; Jovtchev, G.; Pistrick, K.; Stein, N.; Pecinka, A. et al.; Neumann, P.; Novak, P.; Macas, J.; Dear, P.H.; Blattner, F. R.; Scholz, U.; Schubert, I.: Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus. Plant Genome 8 (3), pp. 1 - 14 (2015)

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Wagner, S.; Behera, S.; De Bortoli, S.; Logan, D. C.; Fuchs, P.; Carraretto, L.; Teardo, E.; Cendron, L.; Nietzel, T.; Fuessl, M. et al.; Doccula, F. G.; Navazio, L.; Fricker, M. D.; Van Aken, O.; Finkemeier, I.; Meyer, A. J.; Szabo, I.; Costa, A.; Schwarzlaender, M.: The EF-Hand Ca2+ Binding Protein MICU Choreographs Mitochondrial Ca2+ Dynamics in Arabidopsis. Plant and Cell Physiology 27 (11), pp. 3190 - 3212 (2015)

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Weber, A.; Braybrook, S.; Huflejt, M.; Mosca, G.; Routier-Kierzkowska, A.-L.; Smith, R. S.: Measuring the mechanical properties of plant cells by combining micro-indentation with osmotic treatments. Journal of Experimental Botany 66 (11), pp. 3229 - 3241 (2015)

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Wendeler, E.; Zobell, O.; Chrost, B.; Reiss, B.: Recombination products suggest the frequent occurrence of aberrant gene replacement in the moss Physcomitrellapatens. The Plant Journal 81 (4), pp. 548 - 58 (2015)

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Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G. V.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J. L.; Berns, M. C.; Bujdoso, N.; Piofczyk, T. P.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S. C.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S. J.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M. A.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2), UNSP 14023, pp. 1 - 7 (2015)

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Xue, L.; Cui, H.; Buer, B.; Vijayakumar, V.; Delaux, P.-M.; Junkermann, S.; Bucher, M.: Network of GRAS Transcription Factors Involved in the Control of Arbuscule Development in Lotus japonicus. Plant physiology 167 (3), pp. 854 - 71 (2015)

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Zamioudis, C.; Korteland, J.; Van Pelt, J. A.; van Hamersveld, M.; Dombrowski, N.; Bai, Y.; Hanson, J.; Van Verk, M. C.; Ling, H.-Q.; Schulze-Lefert, P. et al.; Pieterse, C. M. J.: Rhizobacterial volatiles and photosynthesis-related signals coordinate MYB72 expression in Arabidopsis roots during onset of induced systemic resistance and iron-deficiency responses. The Plant Journal 84 (2), pp. 309 - 322 (2015)

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Abdelsamad, A.; Pecinka, A.: Pollen-Specific Activation of Arabidopsis Retrogenes Is Associated with Global Transcriptional Reprogramming. The Plant Cell 26 (8), pp. 3299 - 3313 (2014)

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Akman, K.; Haaf, T.; Gravina, S.; Vijg, J.; Tresch, A.: Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinformatics 30 (13), pp. 1933 - 1934 (2014)

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Alcazar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12), e1004848 (2014)

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Andrés Lalaguna, F.; Porri, A.; Torti, S.; Mateos, J. L.; Romera Branchat, M.; Luis Garcia-Martinez, J.; Fornara, F.; Gregis, V.; Kater, M. M.; Coupland, G.: SHORT VEGETATIVE PHASE reduces gibberellin biosynthesis at the Arabidopsis shoot apex to regulate the floral transition. Proceedings of the National Academy of Sciences of the United States of America 111 (26), pp. E2760 - E2769 (2014)

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Anwer, M. U.; Boikoglou, E.; Herrero, E.; Hallstein, M.; Davis, A. M.; James, G. V.; Nagy, F.; Davis, S. J.: Natural variation reveals that intracellular distribution of ELF3 protein is associated with function in the circadian clock. ELIFE 3, eLife.02206 (2014)

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Bassel, G. W.; Stamm, P.; Mosca, G.; Barbier de Reuille, P.; Gibbs, D. J.; Winter, R.; Janka, A.; Holdsworth, M. J.; Smith, R. S.: Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo. Proceedings of the National Academy of Sciences of the United States of America 111 (23), pp. 8685 - 8690 (2014)

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Baubec, T.; Finke, A.; Mittelsten Scheid, O.; Pecinka, A.: Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO REPORTS 15 (4), pp. 446 - 452 (2014)

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Becker, M.; Maximov, S.; Becker, M.; Meyer, U.; Wittmann, A.; Krämer, R.: Analysis of putative protomer crosstalk in the trimeric transporter BetP: The heterotrimer approach. Biochimica et Biophysica Acta: BBA 1837, pp. 888 - 898 (2014)

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Belfield, E. J.; Brown, C.; Gan, X.; Jiang, C.; Baban, D.; Mithani, A.; Mott, R.; Ragoussis, J.; Harberd, N. P.: Microarray-based ultra-high resolution discovery of genomic deletion mutations. BMC GENOMICS 15, 224 (2014)

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Benke, A.; Urbany, C.; Marsian, J.; Shi, R.; von Wiren, N.; Stich, B.: The genetic basis of natural variation for iron homeostasis in the maize IBM population. BMC Plant Biology 14, 12 (2014)

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Berns, M. C.; Nordstroem, K.; Cremer, F.; Toth, R.; Hartke, M.; Simon, S.; Klasen, J. R.; Buerstel, I.; Coupland, G.: Evening Expression of Arabidopsis GIGANTEA Is Controlled by Combinatorial Interactions among Evolutionarily Conserved Regulatory Motifs. The Plant Cell 26 (10), pp. 3999 - 4018 (2014)

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Bidzinski, P.; Noir, S.; Shahi, S.; Reinstaedler, A.; Gratkowska, D. M.; Panstruga, R.: Physiological characterization and genetic modifiers of aberrant root thigmomorphogenesis in mutants of Arabidopsis thaliana MILDEW LOCUS O genes. Plant, Cell and Environment 37 (12), pp. 2738 - 2753 (2014)

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Bolger, A.; Scossa, F.; Bolger, M. E.; Lanz, C.; Maumus, F.; Tohge, T.; Quesneville, H.; Alseekh, S.; Sorensen, I.; Lichtenstein, G. et al.; Fich, E. A.; Conte, M.; Keller, H.; Schneeberger, K.; Schwacke, R.; Ofner, I.; Vrebalov, J.; Xu, Y.; Osorio, S.; Aflitos, S. A.; Schijlen, E.; Jimenez-Gomez, J. M.; Ryngajllo, M.; Kimura, S.; Kumar, R.; Koenig, D.; Headland, L. R.; Maloof, J. N.; Sinha, N.; van Ham, R. C. H. J.; Lankhorst, R. K.; Mao, L.; Vogel, A.; Arsova, B.; Panstruga, R.; Fei, Z.; Rose, J. K. C.; Zamir, D.; Carrari, F. F.; Giovannoni, J. J.; Weigel, D.; Usadel, B.; Fernie, A. R.: The genome of the stress-tolerant wild tomato species Solanum pennellii. Nature Reviews Genetics 46 (9), pp. 1034 - 1038 (2014)

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Breitenbach, H. H.; Wenig, M.; Wittek, F.; Jorda, L.; Maldonado-Alconada, A. M.; Sarioglu, H.; Colby, T.; Knappe, C.; Bichlmeier, M.; Pabst, E. et al.; Mackey, D.; Parker, J. E.; Vlot, A. C.: Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance. Plant Physiology 165 (2), pp. 791 - 809 (2014)

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Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Single Nucleotide PolymorPhisms in IKZF1, ARID5B and CEBPE are a Risk Factor for the Development of Adult ALL. CLINICAL LYMPHOMA MYELOMA & LEUKEMIA 14, p. S114 - S114 (2014)

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Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Germline variants in IKZF1, ARID5B, and CEBPE as risk factors for adult- onset acute lymphoblastic leukemia: an analysis from the GMALL study group. HAEMATOLOGICA 99 (2), pp. E23 - E25 (2014)

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Bus, A.; Körber, N.; Parkin, I. A. P.; Samans, B.; Snowdon, R. J.; Li, J. Q.; Stich, B.: Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development. Frontiers in Plant Science 5, 485 (2014)

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Carstens, M.; McCrindle, T. K.; Adams, N.; Diener, A.; Guzha, D. T.; Murray, S. L.; Parker, J. E.; Denby, K. J.; Ingle, R. A.: Increased Resistance to Biotrophic Pathogens in the Arabidopsis Constitutive Induced Resistance 1 Mutant Is EDS1 and PAD4-Dependent and Modulated by Environmental Temperature. PLoS One 9 (10), e109853 (2014)

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Castaings, L.; Bergonzi, S.; Albani, M.; Kemi, U.; Savolainen, O.; Coupland, G.: Evolutionary conservation of cold-induced antisense RNAs of FLOWERING LOCUS C in Arabidopsis thaliana perennial relatives. Nature Communications 5, 4457 (2014)

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Chandrasekar, B.; Colby, T.; Emon, A. E. K.; Jiang, J.; Tram Hong, N.; Villamor, J. G.; Harzen, A.; Overkleeft, H. S.; Van der Hoorn, R. A. L.: Broad-range Glycosidase Activity Profiling. Molelcular & Cellular Proteomics 13 (10), pp. 2787 - 2800 (2014)

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Chopra, D.; Wolff, H.; Span, J.; Schellmann, S.; Coupland, G.; Albani, M.; Schrader, A.; Huelskamp, M.: Analysis of TTG1 function in Arabis alpina. BMC Plant Biology 14, 16 (2014)

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Coego, A.; Brizuela, E.; Castillejo, P.; Ruiz, S.; Koncz, C.; del Pozo, J. C.; Pineiro, M.; Jarillo, J. A.; Paz-Ares, J.; Leon, J.: The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. The Plant Journal 77 (6), pp. 944 - 953 (2014)

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Delker, C.; Sonntag, L.; James, G. V.; Janitza, P.; Ibanez, C.; Ziermann, H.; Peterson, T.; Denk, K.; Mull, S.; Ziegler, J. et al.; Davis, S. J.; Schneeberger, K.; Quint, M.: The DET1-COP1-HY5 Pathway Constitutes a Multipurpose Signaling Module Regulating Plant Photomorphogenesis and Thermomorphogenesis. Cell Reports 9 (6), pp. 1983 - 1989 (2014)

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Dettmer, J.; Ursache, R.; Campilho, A.; Miyashima, S.; Belevich, I.; O'Regan, S.; Mullendore, D. L.; Yadav, S. R.; Lanz, C.; Beverina, L. et al.; Papagni, A.; Schneeberger, K.; Weigel, D.; Stierhof, Y.-D.; Moritz, T.; Knoblauch, M.; Jokitalo, E.; Helariutta, Y.: CHOLINE TRANSPORTER-LIKE1 is required for sieve plate development to mediate long-distance cell-to-cell communication. Nature Communications 5, 4276 (2014)

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Doehlemann, G.; Requena, N.; Schaefer, P.; Brunner, F.; O'Connell, R.; Parker, J. E.: Reprogramming of plant cells by filamentous plant-colonizing microbes. New Phytologist 204 (4), pp. 803 - 814 (2014)

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Doehlemann, G.; Requena, N.; Schaefer, P.; O'Connell, R.; Parker, J. E.: Reprogramming of plant cells by filamentous plant-colonizing microbes. New Phytologist 204 (4), DOI: 10.1111/nph.12938, pp. 803 - 814 (2014)

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Doermann, P.; Kim, H.; Ott, T.; Schulze-Lefert, P.; Trujillo, M.; Wewer, V.; Hueckelhoven, R.: Cell-autonomous defense, re-organization and trafficking of membranes in plant-microbe interactions. NEW PHYTOLOGIST 204 (4), pp. 815 - 822 (2014)

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