Scientific Publications since 2002

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Runions, A.; Tsiantis, M.; Prusinkiewicz, P.: A common developmental program can produce diverse leaf shapes. New Phytologist 216 (2), pp. 401 - 418 (2017)

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Rymen, B.; Kawamura, A.; Schaefer, S.; Breuer, C.; Iwase, A.; Shibata, M.; Ikeda, M.; Mitsuda, N.; Koncz, C.; Ohme-Takagi, M. et al.; Matsui, M.; Sugimoto, K.: ABA suppresses root hair growth via OBP4 transcriptional-regulator repression of the RSL2 promoter. Plant Physiology 173 (3), pp. 1750 - 1762 (2017)

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Samad, S.; Kurokura, T.; Koskela, E.; Toivainen, T.; Patel, V.; Mouhu, K.; Sargent, D. J.; Hytonen, T.: Additive QTLs on three chromosomes control flowering time in woodland strawberry (Fragaria vesca L.). HORTICULTURE RESEARCH 4, 17020 (2017)

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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data 4, 170013 (2017)

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Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R.: Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7, 41845 (2017)

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Schiessl, S. V.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8, 1742 (2017)

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Schneeberger, K.; Henderson, I.: Editorial overview: Genome studies and molecular genetics. Current Opinion in Plant Biology 36, pp. IV - V (2017)

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Schoenhals, E. M.; Ding, J.; Ritter, E.; Paulo, M. J.; Cara, N.; Tacke, E.; Hofferbert, H.-R.; Luebeck, J.; Strahwald, J.; Gebhardt, C.: Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array. BMC Genomics 18, 642 (2017)

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Sczyrba, A.; Hofmann, P.; Belmann, P.; Koslicki, D.; Janssen, S.; Droge, J.; Gregor, I.; Majda, S.; Fiedler, J.; Dahms, E. et al.; Bremges, A.; Fritz, A.; Garrido-Oter, R.; Jorgensen, T. S.; Shapiro, N.; Blood, P. D.; Gurevich, A.; Bai, Y.; Turaev, D.; DeMaere, M. Z.; Chikhi, R.; Nagarajan, N.; Quince, C.; Meyer, F.; Balvociute, M.; Hansen, L. H.; Sorensen, S. J.; Chia, B. K. H.; Denis, B.; Froula, J. L.; Wang, Z.; Egan, R.; Don Kang, D.; Cook, J. J.; Deltel, C.; Beckstette, M.; Lemaitre, C.; Peterlongo, P.; Rizk, G.; Lavenier, D.; Wu, Y.-W.; Singer, S. W.; Jain, C.; Strous, M.; Klingenberg, H.; Meinicke, P.; Barton, M. D.; Lingner, T.; Lin, H.-H.; Liao, Y.-C.; Silva, G. G. Z.; Cuevas, D. A.; Edwards, R. A.; Saha, S.; Piro, V. C.; Renard, B. Y.; Pop, M.; Klenk, H.-P.; Goker, M.; Kyrpides, N. C.; Woyke, T.; Vorholt, J. A.; Schulze-Lefert, P.; Rubin, E. M.; Darling, A. E.; Rattei, T.; McHardy, A. C.: Critical Assessment of Metagenome Interpretation — a benchmark of metagenomics software. Nature methods 14, pp. 1063 - 1071 (2017)

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Seah, B. K. B.; Schwaha, T.; Volland, J.-M.; Huettel, B.; Dubilier, N.; Gruber-Vodicka, H. R.: Specificity in diversity: single origin of a widespread ciliate-bacteria symbiosis. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 284 (1858), 20170764 (2017)

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Shigenaga, A. M.; Berens, M. L.; Tsuda, K.; Argueso, C. T.: Towards engineering of hormonal crosstalk in plant immunity. Current Opinion in Plant Biology 38, pp. 164 - 172 (2017)

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Shin, J.; Sánchez-Villarreal, A.; Davis, A. M.; Du, S. X.; Berendzen, K. W.; Koncz, C.; Ding, Z.; Li, C.; Davis, S. J.: The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner. Plant, Cell and Environment 40, pp. 997 - 1008 (2017)

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Sinclair, S. A.; Larue, C.; Bonk, L.; Khan, A.; Castillo-Michel, H.; Stein, R. J.; Grolimund, D.; Begerow, D.; Neumann, U.; Haydon, M. J. et al.; Kraemer, U.: Etiolated Seedling Development Requires Repression of Photomorphogenesis by a Small Cell-Wall-Derived Dark Signal. Current Biology 27 (22), pp. 3403 - 3418 (2017)

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Soyk, S.; Mueller, N.A.; Park, S.J.; Schmalenbach, I.; Jiang, K.; Hayama, R.; Zhang, L.; Van Eck, J.; Jiménez-Gómez, J. M.; Lippman, Z. N.: Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato. Nature Genetics 49, pp. 162 - 168 (2017)

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Stamm, P.; Strauß, S.; Montenegro-Johnson, T. D.; Smith, R. S.; Bassel, G. W.: In Silico Methods for Cell Annotation, Quantification of Gene Expression, and Cell Geometry at Single-Cell Resolution Using 3DCellAtlas. PLANT HORMONES: METHODS AND PROTOCOLS, 3RD EDITION, pp. 99 - 123 (2017)

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Templer, S. E.; Ammon, A.; Pscheidt, D.; Ciobotea, O.; Schuy, C.; McCollum, C.; Sonnewald, U.; Hanemann, A.; Förster, J.; Ordon, F. et al.; von Korff, M.; Voll, L. M.: Metabolite profiling of barley flag leaves under drought and combined heat and drought stress reveals metabolic QTLs for metabolites associated with antioxidant defense. Journal of Experimental Botany 68 (7), pp. 1697 - 1713 (2017)

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Tomé, F.; Jansseune, K.; Saey, B.; Grundy, J.; Vandenbroucke, K.; Hannah, M. A.; Redestig, H.: rosettR: protocol and software for seedling area and growth analysis. Plant Methods 13, 13 (2017)

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Toraeng, P.; Vikstrom, L.; Wunder, J.; Woetzel, S.; Coupland, G.; Agren, J.: Evolution of the selfing syndrome: Anther orientation and herkogamy together determine reproductive assurance in a self-compatible plant. Evolution 71 (9), pp. 2206 - 2218 (2017)

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Tsugawa, S.; Hervieux, N.; Kierzkowski, D.; Routier-Kierzkowska, A.-L.; Sapala, A.; Hamant, O.; Smith, R. S.; Roeder, A. H. K.; Boudaoud, A.; Li, C.-B.: Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development 144 (23), pp. 4398 - 4405 (2017)

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van Esse, W.; Walla, A.; Finke, A.; Koornneef, M.; Pecinka, A.; von Korff, M.: Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174 (4), pp. 2397 - 2408 (2017)

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Vu, G. T. H.; Cao, H. X.; Fauser, F.; Reiss, B.; Puchta, H.; Schubert, I.: Endogenous sequence patterns predispose the repair modes of CRISPR/Cas9-induced DNA double-stranded breaks in Arabidopsis thaliana. The Plant Journal 92 (1), pp. 57 - 67 (2017)

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Vu, G. T. H.; Cao, H. X.; Reiss, B.; Schubert, I.: Deletion-bias in DNA double-strand break repair differentially contributes to plant genome shrinkage. New Phytologist 214 (4), pp. 1712 - 1721 (2017)

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Wanderley, A. M.; Vasconcelos, S.; Huettel, B.; Machado, I. C.; Benko-Iseppon, A. M.: Development of 15 SSR polymorphic markers for the endangered Ameroglossum pernambucense Eb. Fischer, S. Vogel & A. V. Lopes (Scrophulariaceae), and cross-transferability in congeneric taxa. Brazilian Journal of Botany 40 (4), pp. 1007 - 1011 (2017)

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Wang, Y.; Gupta, R.; Song, W.; Huh, H.-H.; Lee, S. E.; Wu, J.; Agrawal, G. K.; Rakwal, R.; Kang, K. Y.; Park, S.-R. et al.; Kim, S. T.: Label-free quantitative secretome analysis of Xanthomonas oryzae pv. oryzae highlights the involvement of a novel cysteine protease in its pathogenicity. Journal of Proteomics 169, pp. 202 - 214 (2017)

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Wu, J.; Wang, Y.; Kim, S. G.; Jung, K.-H.; Gupta, R.; Kim, J.; Park, Y.; Kang, K. Y.; Kim, S. T.: A secreted chitinase-like protein (OsCLP) supports root growth through calcium signaling in Oryza sativa. Physiologia Plantarum 161 (2), pp. 273 - 284 (2017)

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Zhou, Y.; Romero-Campero , F. J.; Gómez-Zambrano , A.; Turck, F.; Calonje, M.: H2A monoubiquitination in Arabidopsis thaliana is generally independent of LHP1 and PRC2 activity. Genome Biology 18, 69 (2017)

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Zhou, Y.; Tergemina, E.; Cui, H.; Foerderer, A.; Hartwig, B.; James, G. V.; Schneeberger, K.; Turck, F.: Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 114 (18), pp. 4833 - 4838 (2017)

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Adibi, M.; Yoshida, S.; Weijers, D.; Fleck, C.: Centering the Organizing Center in the Arabidopsis thaliana Shoot Apical Meristem by a Combination of Cytokinin Signaling and Self-Organization. PLOS ONE 11 (2), e0147830 (2016)

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Agler, M.T.; Ruhe, J.; Kroll, S.; Morhenn, C.; Kim, S.-T.; Weigel, D.; Kemen, E.: Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation. PLoS Biology 14 (1), e1002352 (2016)

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Alles, J.; Menegatti, J.; Motsch, N.; Hart, M.; Reinhardt, R.; Eichner, N.; Meister, G.; Grässer, F. A.: miRNA expression profiling of Epstein-Barr virus-associated NKTL cell lines by Illumina deep sequencing. Febs Open Bio 6, pp. 251 - 263 (2016)

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Alonso-Blanco, C.; Andrade, J.; Becker, C.; Bemm, F.; Bergelson, J.; Borgwardt, K. M.; Cao, J.; Chae, E.; Dezwaan, T. M.; Ding, W. et al.; Ecker, J. R.; Exposito-Alonso, M.; Farlow, A.; Fitz, J.; Gan, X.; Grimm, D. G.; Hancock, A. M.; Henz, S. R.; Holm, S.; Horton, M.; Jarsulic, M.; Kerstetter, R. A.; Korte, A.; Korte, P.; Lanz, C.; Lee, C.-R.; Meng, D.; Michael, T. P.; Mott, R.; Muliyati, N.W.; Nägele, T.; Nagler, M.; Nizhynska, V.; Nordborg, M.; Novikova, P. Y.; Picó, F. X.; Platzer, A.; Rabanal, F. A.; Rodriguez, A.; Rowan, B. A.; Salomé, P. A.; Schmid, K. J.; Schmitz, R. J.; Seren, Ü.; Sperone, F. G.; Sudkamp, M.; Svardal, H.; Tanzer, M. M.; Todd, D.; Volchenboum, S. L.; Wang, C.; Wang, G.; Wang, X.; Weckwerth, W.; Weigel, D.; Zhou, X.: 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana. Cell 166, pp. 481 - 491 (2016)

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Alves, R. N.; Gomes, A. S.; Stueber, K.; Tine, M.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: The transcriptome of metamorphosing flatfish. BMC Genomics 17, 413 (2016)

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Azevedo, H.; Azinheiro, S. G.; Munoz-Merida, A.; Castro, P. H.; Huettel, B.; Aarts, M. G. M.; Assuncao, A. G. L.: Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. GENOMICS DATA 7, pp. 256 - 258 (2016)

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Bar, M.; Israeli, A.; Levy, M.; Ben Gera, H.; Jimenez-Gomez, J. M.; Kouril, S.; Tarkowski, P.; Ori, N.: CLAUSA Is a MYB Transcription Factor That Promotes Leaf Differentiation by Attenuating Cytokinin Signaling. Plant Cell 28 (7), pp. 1602 - 1615 (2016)

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Bassel, G. W.; Smith, R. S.: Quantifying morphogenesis in plants in 4D. Current Opinion in Plant Biology 29, pp. 87 - 94 (2016)

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Beil-Wagner, J.; Doessinger, G.; Schober, K.; vom Berg, J.; Tresch, A.; Grandl, M.; Palle, P.; Mair, F.; Gerhard, M.; Becher, B. et al.; Busch, D. H.; Buch, T.: T cell-specific inactivation of mouse CD2 by CRISPR/Cas9. Scientific Reports 6, 21377 (2016)

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Bewick, A.; Ji, L.; Niederhuth, C.; Willing, E.-M.; Hofmeister, B. T.; Shi, X.; Wang, L.; Lu, Z.; Rohr, N.; Hartwig, B. et al.; Kiefer, C.; Deal, R. B.; Schmutz, J.; Grimwood, J.; Stroud, H.; Jacobsen, S. E.; Schneeberger, K.; Zhang, X.; Schmitz, R. J.: On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America 113 (32), pp. 9111 - 9116 (2016)

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Blättner, S.; Das, S.; Paprotka, K.; Eilers, U.; Krischke, M.; Kretschmer, D.; Remmele, C.W.; Dittrich, M.; Müller, T.; Schuelein-Voelk, C. et al.; Hertlein, T.; Huettel, B.; Reinhardt, R.; Ohlsen, K.; Rudel, T.; Fraunholz, M.J.: Staphylococcus aureus Exploits a Non-ribosomal Cyclic Dipeptide to Modulate Survival within Epithelial Cells and Phagocytes. PLoS Pathogens 12, e1005857 (2016)

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Bucher, M.; Fabianska, I.: Long-Sought Vacuolar Phosphate Transporters Identified. Trends in Plant Science 21, pp. 463 - 466 (2016)

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Cao, D.; Xu, H.; Zhao, Y.; Deng, X.; Liu, Y.; Soppe, W.; Lin, J.: ranscriptome and degradome sequencing reveals dormancy mechanisms of Cunninghamia lanceolate seeds. Plant Physiology 172, pp. 2347 - 2362 (2016)

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Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)

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Chandrasekar, B.; Van der Hoorn, R. A. L.: Beta galactosidases in Arabidopsis and tomato - a mini review. Biochemical Society Transactions (London) 44, pp. 150 - 158 (2016)

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Clarke, W. E.; Higgins, E. E.; Plieske, J.; Wieseke, R.; Sidebottom, C.; Khedikar, Y.; Batley, J.; Edwards, D.; Meng, J.; Li, R. et al.; Lawley, C. T.; Pauquet, J.; Laga, B.; Cheung, W.; Iniguez-Luy, F.; Dyrszka, E.; Rae, S.; Stich, B.; Snowdon, R.J.; Sharpe, A.G.; Ganal, M. W.; Parkin, I. A. P.: A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome. Theoretical and Applied Genetics 129 (10), pp. 1887 - 1899 (2016)

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Couto, D.; Niebergall, R.; Liang, X.; Bucherl, C. A.; Sklenar, J.; Macho, A. P.; Ntoukakis, V.; Derbyshire, P.; Altenbach, D.; Maclean, D. et al.; Robatzek, S.; Uhrig, J.; Menke, F.; Zhou, J.-M.; Zipfel, C.: The Arabidopsis Protein Phosphatase PP2C38 Negatively Regulates the Central Immune Kinase BIK1. PLoS Pathogens 12 (8), e1005811 (2016)

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Das, S.; Lindemann, C.; Young, B.C.; Muller, J.; Österreich, B.; Ternette, N.; Winkler, A.-C.; Paprotka, K.; Reinhardt, R.; Förstner, K.U. et al.; Allen, E.; Flaxman, A.; Yamaguchi, Y.; Rollier, C.S.; Diemen, P.V.; Blättner, S.; Remmele, C.W.; Selle, M.; Dittrich, M.; Müller, T.; Vogel, J.; Ohlsen, K.; Crook, D.W.; Massey, R.; Wilson, D.J.; Rudel, T.; Wyllie, D.H.; Fraunholz, M.J.: Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3101 - E3110 (2016)

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Digel, B.; Tavakol, E.; Verderio, G.; Tondelli, A.; Xu, X.; Cattivelli, L.; Rossini, L.; von Korff, M.: Photoperiod-H1 (Ppd-H1) Controls Leaf Size. Plant Physiology 172, pp. 405 - 415 (2016)

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Dörries, M.; Wöhlbrand, L.; Kube, M.; Reinhardt, R.; Rabus, R.: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059. BMC Genomics 19, 918 (2016)

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Dose, A.; Sindlinger, J.; Bierlmeier, J.; Bakirbas, A.; Schulze-Osthoff, K.; Einsele-Scholz, S.; Hartl, M.; Essmann, F.; Finkemeier, I.; Schwarzer, D.: Interrogating Substrate Selectivity and Composition of Endogenous Histone Deacetylase Complexes with Chemical Probes. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 55 (3), pp. 1192 - 1195 (2016)

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Dugar, G.; Svensson, S. L.; Bischler, T.; Waeldchen, S.; Reinhardt, R.; Sauer, M.; Sharma, C. M.: The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni. Nature Communications 7, 11667 (2016)

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Dursun, E.; Endele, M.; Musumeci, A.; Failmezger, H.; Wang, S.-H.; Tresch, A.; Schroeder, T.; Krug, A. B.: Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. Scientific Reports 6, 37462 (2016)

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