Scientific Publications since 2002 | Max Planck Institute for Plant Breeding Research

Max Planck Institute for Plant Breeding Research

Journal Article (2291)

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Schneeberger, K.; Ossowski, S.; Ott, F.; Klein, J. D.; Wang, X.; Lanz, C.; Smith, L. M.; Cao, J.; Fitz, J.; Warthmann, N. et al.; Henz, S. R.; Huson, D. H.; Weigel, D.: Reference-guided assembly of four diverse Arabidopsis thaliana genomes. Proceedings of the National Academy of Sciences of the United States of America 108 (25), pp. 10249 - 10254 (2011)

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Schneeberger, K.; Weigel, D.: Fast-forward genetics enabled by new sequencing technologies. Trends in Plant Science 16 (5), pp. 282 - 288 (2011)

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Schulte, L. N.; Eulalio, A.; Mollenkopf, H. J.; Reinhardt, R.; Vogel, J.: Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO Journal 30 (10), pp. 1977 - 1989 (2011)

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Schulze-Lefert, P.; Panstruga, R.: A molecular evolutionary concept connecting nonhost resistance, pathogen host range, and pathogen speciation. Trends in Plant Science 16, pp. 117 - 125 (2011)

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Shirzadi, R.; Andersen, E. D.; Bjerkan, K. N.; Gloeckle, B. M.; Heese, M.; Ungru, A.; Winge, P.; Koncz, C.; Aalen, R. B.; Schnittger, A. et al.; Grini, P. E.: Genome-Wide Transcript Profiling of Endosperm without Paternal Contribution Identifies Parent-of-Origin-Dependent Regulation of AGAMOUS-LIKE36. PLoS Genetics 7 (2), e1001303 (2011)

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Silady, R. A.; Effgen, S.; Koornneef, M.; Reymond, M.: Variation in Seed Dormancy Quantitative Trait Loci in Arabidopsis thaliana Originating from One Site. PLoS ONE 6 (6), e20886 (2011)

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Stein, H.; Honig, A.; Miller, G.; Erster, O.; Eilenberg, H.; Csonka, L. N.; Szabados, L.; Koncz, C.; Zilberstein, A.: Elevation of free proline and proline-rich protein levels by simultaneous manipulations of proline biosynthesis and degradation in plants. PLANT SCIENCE 181 (2), pp. 140 - 150 (2011)

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Stenvalla, J.; Fierro-González, J. C.; Swoboda, P.; Saamarthy, K.; Cheng, Q.; Cacho-Valadez, P.; Arnér, E. S. J.; Persson, O.; Miranda-Vizuete, A.; Tuck, S.: Selenoprotein TRXR-1 and GSR-1 are essential for removal of old cuticle during molting in Caenorhabditis elegans. Proceedings of the National Academy of Sciences 108, 10.1073/pnas.1006328108, pp. 1064 - 1069 (2011)

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Stich, B.; Gebhardt, C.: Detection of epistatic interactions in association mapping populations: an example from tetraploid potato. Heredity 107, doi: 10.1038/hdy.2011.40, pp. 537 - 547 (2011)

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Stolle, E.; Wilfert, L.; Schmid-Hempel, R.; Schmid-Hempel, P.; Kube, M.; Reinhardt, R.; Moritz, R. F. A.: A second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the Apidae. BMC Genomics 12, 48 (2011)

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Stuttmann, J.; Hubberten, H.-M.; Rietz, S.; Kaur, J.; Muskett, P.; Guerois, R.; Bednarek, P.; Hoefgen, R.; Parker, J. E.: Perturbation of Arabidopsis Amino Acid Metabolism Causes Incompatibility with the Adapted Biotrophic Pathogen Hyaloperonospora arabidopsidis. PLANT CELL 23 (7), pp. 2788 - 2803 (2011)

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Tine, M.; Kuhl, H.; Beck, A.; Bargelloni, L.; Reinhardt, R.: Comparative analysis of intronless genes in teleost fish genomes: Insights into their evolution and molecular function. Marine Genomics 4 (2), pp. 109 - 119 (2011)

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Tramontano, A.; Donath, A.; Bernhart, S. H.; Reiche, K.; Boehmdorfer, G.; Stadler, P. F.; Bachmair, A.: Deletion analysis of the 3 ' long terminal repeat sequence of plant retrotransposon Tto1 identifies 125 base pairs redundancy as sufficient for first strand transfer. VIROLOGY 412 (1), pp. 75 - 82 (2011)

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Turck, F.; Coupland, G.: When Vernalization Makes Sense. Science 331 (6013), pp. 36 - 37 (2011)

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Ufaz, S.; Shukla, V.; Soloveichik, Y.; Golan, Y.; Breuer, F.; Koncz, Z.; Galili, G.; Koncz, C.; Zilberstein, A.: Transcriptional control of aspartate kinase expression during darkness and sugar depletion in Arabidopsis: involvement of bZIP transcription factors. Planta 233 (5), pp. 1025 - 1040 (2011)

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Uppalapati, S. R.; Ishiga, Y.; Ryu, C. M.; Ishiga, T.; Wang, K.; Noël, L. D.; Parker, J. E.; Mysore, K. S.: SGT1 contributes to coronatine signaling and Pseudomonas syringae pv. tomato disease symptom development in tomato and Arabidopsis. New Phytologist 189 (1), pp. 83 - 93 (2011)

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Urbany, C.; Stich, B.; Schmidt, L.; Simon, L.; Berding, H.; Junghans, H.; Niehoff, K. H.; Braun, A.; Tacke, E.; Hofferbert, H. R. et al.; Lubeck, J.; Strahwald, J.; Gebhardt, C.: Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration. BMC Genomics 12, 7 (2011)

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Van der Hoorn, R. A. L.; Colby, T.; Nickel, S.; Richau, K. H.; Schmidt, J.; Kaiser, M.: Mining the active proteome of Arabidopsis thaliana. Frontiers in Plant Science 2, 10.3389/fpls.2011.00089, p. 89 (2011)

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van Zanten, M.; Koini, M. A.; Geyer, R.; Liu, Y.; Brambilla, V.; Bartels, D.; Koornneef, M.; Fransz, P.; Soppe, W. J. J.: Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 108 (50), pp. 20219 - 20224 (2011)

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Vashisht, D.; Hesselink, A.; Pierik, R.; Ammerlaan, H.; Bailey-Serres, J.; Visser, E. J. W.; Pedersen, O.; van Zanten, M.; Vreugdenhil, D.; Jamar, D. C. L. et al.; Voesenek, L. A. C. J.; Sasidharan, R.: Natural variation of submergence tolerance among Arabidopsis thaliana accessions. New Phytologist 190, DOI: 10.1111/j.1469-8137.2010.03552.x, pp. 299 - 310 (2011)

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Wagner, S.; Rietz, S.; Parker, J. E.; Niefind, K.: Crystallization and preliminary crystallographic analysis of Arabidopsis thaliana EDS1, a key component of plant immunity, in complex with its signalling partner SAG101. Acta Crystallographica Section F-Structural Biology and Crystallization Communications 67, pp. 245 - 248 (2011)

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Waldmueller, S.; Erdmann, J.; Binner, P.; Gelbrich, G.; Pankuweit, S.; Geier, C.; Timmermann, B.; Haremza, J.; Perrot, A.; Scheer, S. et al.; Wachter, R.; Schulze-Waltrup, N.; Dermintzoglou, A.; Schoenberger, J.; Zeh, W.; Jurmann, B.; Brodherr, T.; Boergel, J.; Farr, M.; Milting, H.; Blankenfeldt, W.; Reinhardt, R.; Oezcelik, C.; Osterziel, K.-J.; Loeffler, M.; Maisch, B.; Regitz-Zagrosek, V.; Schunkert, H.; Scheffold, T.: Novel correlations between the genotype and the phenotype of hypertrophic and dilated cardiomyopathy: results from the German Competence Network Heart Failure. EUROPEAN JOURNAL OF HEART FAILURE 13 (11), pp. 1185 - 1192 (2011)

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Wang, R. H.; Albani, M. C.; Vincent, C.; Bergonzi, S.; Luan, M.; Bai, Y.; Kiefer, C.; Castillo, R.; Coupland, G.: Aa TFL1 Confers an Age-Dependent Response to Vernalization in Perennial Arabis alpina. Plant Cell 23 (4), pp. 1307 - 1321 (2011)

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Winter, C. M.; Austin, R. S.; Blanvillain-Baufume, S.; Reback, M. A.; Monniaux, M.; Wu, M. F.; Sang, Y.; Yamaguchi, A.; Yamaguchi, N.; Parker, J. E. et al.; Parcy, F.; Jensen, S. T.; Li, H. Z.; Wagner, D.: LEAFY Target Genes Reveal Floral Regulatory Logic, cis Motifs, and a Link to Biotic Stimulus Response. Developmental Cell 20 (4), pp. 430 - 443 (2011)

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Young, N. D.; Debelle, F.; Oldroyd, G. E. D.; Geurts, R.; Cannon, S. B.; Udvardi, M. K.; Benedito, V. A.; Mayer, K. F. X.; Gouzy, J.; Schoof, H. et al.; Van de Peer, Y.; Proost, S.; Cook, D.R.; Meyers, B. C.; Spannagl, M.; Cheung, F.; De Mita, S.; Krishnakumar, V.; Gundlach, H.; Zhou, S.; Mudge, J.; Bharti, A. K.; Murray, J. D.; Naoumkina, M. A.; Rosen, B.; Silverstein, K. A. T.; Tang, H.; Rombauts, S.; Zhao, P. X.; Zhou, P.; Barbe, V.; Bardou, P.; Bechner, M.; Bellec, A.; Berger, A.; Berges, H.; Bidwell, S.; Bisseling, T.; Choisne, N.; Couloux, A.; Denny, R.; Deshpande, S.; Dai, X.; Doyle, J.; Dudez, A.-M.; Farmer, A. D.; Fouteau, S.; Franken, C.; Gibelin, C.; Gish, J.; Goldstein, S.; Gonzalez, A. J.; Green, P. J.; Hallab, A.; Hartog, M.; Hua, A.; Humphray, S.J.; Jeong, D.-H.; Jing, Y.; Joecker, A.; Kenton, S. M.; Kim, D.-J.; Klee, K.; Lai, H.; Lang, C.; Lin, S.; Macmil, S. L.; Magdelenat, G.; Matthews, L.; McCorrison, J.; Monaghan, E.L.; Mun, J.-H.; Najar, F. Z.; Nicholson, C.; Noirot, C.; O'Bleness, M.; Paule, C.R.; Poulain, J.; Prion, F.; Qin, B.; Qu, C.; Retzel, E. F.; Riddle, C.; Sallet, E.; Samain, S...; Samson, N.; Sanders, I.; Saurat, O.; Scarpelli, C.; Schiex, T.; Segurens, B.; Severin, A. J.; Sherrier, D. J.; Shi, R.; Sims, S.; Singer, S. R.; Sinharoy, S.; Sterck, L.; Viollet, A.; Wang, B.-B.; Wang, K.; Wang, M.; Wang, X.; Warfsmann, J.; Weissenbach, J.; White, D. D.; White, J. D.; Wiley, G. B.; Wincker, P.; Xing, Y.; Yang, L.; Yao, Z.; Ying, F.; Zhai, J.; Zhou, L.; Zuber, A.; Denarie, J.; Dixon, R.A.; May, G. D.; Schwartz, D. C.; Rogers, J.; Quetier, F.; Town, C. D.; Roe, B. A.: The Medicago genome provides insight into the evolution of rhizobial symbioses. NATURE 480 (7378), pp. 520 - 524 (2011)

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Zedelius, J.; Rabus, R.; Grundmann, O.; Werner, I.; Brodkorb, D.; Schreiber, F.; Ehrenreich, P.; Behrends, A.; Wilkes, H.; Kube, M. et al.; Reinhardt, R.; Widdel, F.: Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation. ENVIRONMENTAL MICROBIOLOGY REPORTS 3 (1), pp. 125 - 135 (2011)

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Ziemann, M.; Bhave, M.; Zachgo, S.: Bioinformatic studies of the wheat glutaredoxin gene family and functional analysis of the ROXY1 orthologues. FUNCTIONAL PLANT BIOLOGY 38 (1), pp. 25 - 34 (2011)

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Achenbach, U.; Tang, X. M.; Ballvora, A.; de Jong, H.; Gebhardt, C.: Comparison of the chromosome maps around a resistance hot spot on chromosome 5 of potato and tomato using BAC-FISH painting. Genome 53 (2), pp. 103 - 110 (2010)

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Adrian, J.; Farrona, S.; Reimer, J. J.; Albani, M.; Coupland, G.; Turck, F.: cis-Regulatory Elements and Chromatin State Coordinately Control Temporal and Spatial Expression of FLOWERING LOCUS T in Arabidopsis. Plant Cell 22, 10.1105/tpc.110.074682, pp. 1425 - 1440 (2010)

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Ahmadinejad, N.; Dagan, T.; Gruenheit, N.; Martin, W.; Gabaldon, T.: Evolution of spliceosomal introns following endosymbiotic gene transfer. BMC Evolutionary Biology 10, 57 (2010)

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Alcázar, R.; Altabella, T.; Marco, F.; Bortolotti, C.; Reymond, M.; Koncz, C.; Carrasco, P.; Tiburcio, A. F.: Polyamines: molecules with regulatory functions in plant abiotic stress tolerance. Planta 231 (6), pp. 1237 - 1249 (2010)

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Alcázar, R.; Garcia, A. V.; Kronholm, I.; de Meaux, J.; Koornneef, M.; Parker, J. E.; Reymond, M.: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nature Genetics 42, doi:10.1038/ng.704, pp. 1135 - 1139 (2010)

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Appelhagen, I.; Huep, G.; Lu, G. H.; Strompen, G.; Weisshaar, B.; Sagasser, M.: Weird fingers: Functional analysis of WIP domain proteins. FEBS Letters 584 (14), pp. 3116 - 3122 (2010)

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Assunçãoa, A. G. L.; Herrero, E.; Lin, Y.-F.; Huettel, B.; Talukdar, S.; Smaczniak, C.; Immink, R. G. H.; van Eldik, M.; Fiers, M.; Schat, H. et al.; Aarts, M. G. M.: Arabidopsis thaliana transcription factors bZIP19 and bZIP23 regulate the adaptation to zinc deficiency. Proceedings of the National Academy of Sciences 107, 10.1073/pnas.1004788107, pp. 10296 - 10301 (2010)

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Atwell, S.; Huang, Y. S.; Vilhjalmsson, B. J.; Willems, G.; Horton, M.; Li, Y.; Meng, D. Z.; Platt, A.; Tarone, A. M.; Hu, T. T. et al.; Jiang, R.; Muliyati, N. W.; Zhang, X.; Amer, M. A.; Baxter, I.; Brachi, B.; Chory, J.; Dean, C.; Debieu, M.; de Meaux, J.; Ecker, J. R.; Faure, N.; Kniskern, J. M.; Jones, J. D. G.; Michael, T.; Nemri, A.; Roux, F.; Salt, D. E.; Tang, C. L.; Todesco, M.; Traw, M. B.; Weigel, D.; Marjoram, P.; Borevitz, J. O.; Bergelson, J.; Nordborg, M.: Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature 465 (7298), pp. 627 - 631 (2010)

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Bai, Y.; Falk, S.; Schnittger, A.; Jakoby, M. J.: Tissue layer specific regulation of leaf length and width in Arabidopsis as revealed by the cell autonomous action of ANGUSTIFOLIA. The Plant Journal 61, pp. 191 - 199 (2010)

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Bartsch, M.; Bednarek, P.; Vivancos, P. D.; Schneider, B.; von Roepenack-Lahaye, E.; Foyer, C.; Kombrink, E.; Scheel, D.; Parker, J.: Accumulation of isochorismate-derived 2,3-dihydroxybenzoic 3-O-β-D-xyloside in Arabidopsis resistance to pathogens and ageing of leaves. Journal of Biological Chemistry 285, doi:10.1074/jbc.M109.092569, pp. 25654 - 25665 (2010)

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Bednarek, P.; Kwon, C.; Schulze-Lefert, P.: Not a peripheral issue: secretion in plant–microbe interactions. Current Opinion in Plant Biology 13, doi:10.1016/j.pbi.2010.05.002, pp. 378 - 387 (2010)

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Bentsink, L.; Hanson, J.; Hanhart, C. J.; Blankestijn-De Vries, H.; Coltrane, C.; Keizer, P.; El-Lithy, M.; Alonso-Blanco, C.; de Andrés, M. T.; Reymond, M. et al.; van Eeuwijk, F.; Smeekens, S.; Koornneef, M.: Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways. Proceedings of the National Academy of Sciences 107, 10.1073/pnas.1000410107, pp. 4264 - 4269 (2010)

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Boehmdorfer, G.; Tramontano, A.; Luxa, K.; Bachmair, A.: A synthetic biology approach allows inducible retrotransposition in whole plants. Systems and Synthetic Biology 4 (2), 10.1007/s11693-010-9053-4, pp. 133 - 138 (2010)

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Boerngen, K.; Battle, A. R.; Möker, N.; Morbach, S.; Marin, K.; Martinac, B.; Kraemer, R.: The properties and contribution of the Corynebacterium glutamicum MscS variant to fine-tuning of osmotic adaptation. Biochimica et Biophysica Acta-Biomembranes 1798 (11), pp. 2141 - 2149 (2010)

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Boerngen, K.; Battle, A. R.; Möker, N.; Morbach, S.; Marin, K.; Martinac, B.; Kraemer, R.: Significance of the Corynebacterium Glutamicum YggB Protein in Fine-Tuning of Compatible Solute Accumulation. Biophysical Journal 98 (3), p. 326A - 326A (2010)

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Bulgarelli, D.; Biselli, C.; Collins, N. C.; Consonni, G.; Stanca, A. M.; Schulze-Lefert, P.; Valè, G.: The CC-NB-LRR-Type Rdg2a Resistance Gene Confers Immunity to the Seed-Borne Barley Leaf Stripe Pathogen in the Absence of Hypersensitive Cell Death. PLoS ONE 5 (9), 10.1371/journal.pone.0012599 (2010)

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Causier, B.; Castillo, R.; Xue, Y. B.; Schwarz-Sommer, Z.; Davies, B.: Tracing the Evolution of the Floral Homeotic B- and C-Function Genes through Genome Synteny. Molecular Biology and Evolution 27 (11), pp. 2651 - 2664 (2010)

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Causier, B.; Schwarz-Sommer, Z.; Davies, B.: Floral organ identity: 20 years of ABCs. Seminars in Cell & Developmental Biology 21 (1), pp. 73 - 79 (2010)

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Chen, W. H.; de Meaux, J.; Lercher, M. J.: Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions. BMC Genomics 11, doi:10.1186/1471-2164-11-178, p. 178 - 178 (2010)

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Childs, L. H.; Witucka-Wall, H.; Gunther, T.; Sulpice, R.; von Korff, M.; Stitt, M.; Walther, D.; Schmid, K. J.; Altmann, T.: Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana. BMC Genomics 11, 188 (2010)

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Chodavarapu, R. K.; Feng, S. H.; Bernatavichute, Y. V.; Chen, P. Y.; Stroud, H.; Yu, Y. C.; Hetzel, J. A.; Kuo, F.; Kim, J.; Cokus, S. J. et al.; Casero, D.; Bernal, M.; Huijser, P.; Clark, A. T.; Kramer, U.; Merchant, S. S.; Zhang, X. Y.; Jacobsen, S. E.; Pellegrini, M.: Relationship between nucleosome positioning and DNA methylation. Nature 466 (7304), pp. 388 - 392 (2010)

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Christensen, A.; Svensson, K.; Thelin, L.; Zhang, W.; Tintor, N.; Prins, D.; Funke, N.; Michalak, M.; Schulze-Lefert, P.; Saijo, Y. et al.; Sommarin, M.; Widell, W.; Persson, P.: Higher plant calreticulins have acquired specialized functions in Arabidopsis. PLOS ONE 5(6), doi:10.1371/journal.pone.0011342, p. e11342 (2010)

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Consonni, C.; Bednarek, P.; Humphry, M.; Francocci, F.; Ferrari, S.; Harzen, A.; Ver Loren van Themaat, E.; Panstruga, R.: Tryptophan-Derived Metabolites Are Required for Antifungal Defense in the Arabidopsis mlo2 Mutant. Plant Physiology 152 (3), pp. 1544 - 1561 (2010)

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