Publications of K. Schneeberger
All genres
Journal Article (80)
2024
Journal Article
Meiotic recombination dynamics in plants with repeat-based holocentromeres shed light on the primary drivers of crossover patterning. Nature Plants (2024)
Journal Article
53 (15), pp. 8833 - 8848 (2024)
Epigenetic and transcriptional consequences in the endosperm of chemically induced transposon mobilization in Arabidopsis. Nucleic Acids Research
Journal Article
25 (1), 194 (2024)
The vast majority of somatic mutations in plants are layer-specific. Genome Biology: Biology for the Post-Genomic Era
Journal Article
56, pp. 982 - 991 (2024)
A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range. Nature Genetics
Journal Article
24 (1), 912 (2024)
The identification and analysis of meristematic mutations within the apple tree that developed the RubyMac sport mutation. BMC Plant Biology 2023
Journal Article
192 (2), pp. 821 - 836 (2023)
Reliable genotyping of recombinant genomes using a robust hidden Markov model. Plant Physiology 2022
Journal Article
Barley Ror1 encodes a class XI myosin required for mlo-based broad-spectrum resistance to the fungal powdery mildew pathogen. The Plant Journal (2022)
Journal Article
38 (10), pp. 2922 - 2926 (2022)
plotsr: visualizing structural similarities and rearrangements between multiple genomes. Bioinformatics
Journal Article
13 (1), 3828 (2022)
The megabase-scale crossover landscape is largely independent of sequence divergence. Nature Communications
Journal Article
Rapid large-scale genomic introgression in Arabidopsis suecica via an autoallohexaploid bridge. Genetics (2022)
Journal Article
54 (3), pp. 342 - 348 (2022)
Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar. Nature Genetics
Journal Article
236, pp. 729 - 744 (2022)
FLOWERING REPRESSOR AAA(+) ATPase 1 is a novel regulator of perennial flowering in Arabis alpina. New Phytologist 2021
Journal Article
38 (4), pp. 1225 - 1240 (2021)
The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Molecular Biology and Evolution
Journal Article
Natural variation identifies a Pxy gene controlling vascular organisation and formation of nodules and lateral roots in Lotus japonicus. New Phytologist (2021)
Journal Article
118 (39), e2109204118 (2021)
Transposition and duplication of MADS-domain transcription factor genes in annual and perennial Arabis species modulates flowering. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
12, 767772 (2021)
Genetic and Molecular Analysis of Root Hair Development in Arabis alpina. Frontiers in Plant Science
Journal Article
374 (6569), eabi7489, pp. 840 - + (2021)
The genetic and epigenetic landscape of the Arabidopsis centromeres. SCIENCE
Journal Article
33 (4), pp. 832 - 845 (2021)
Anno genominis XX: 20 years of Arabidopsis genomics. The Plant Cell
Journal Article
16 (1), 11 (2021)
Using the longest run subsequence problem within homology-based scaffolding. Algorithms for Molecular Biology
Journal Article
230 (3), pp. 1078 - 1094 (2021)
A mis-regulated cyclic nucleotide-gated channel mediates cytosolic calcium elevation and activates immunity in Arabidopsis. New Phytologist 2020
Journal Article
21 (1), 306 (2020)
Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes. Genome Biology and Evolution
Journal Article
30 (9), pp. 1740 - 1747.e6 (2020)
Bacterial Infection Disrupts Clock Gene Expression to Attenuate Immune Responses. Current Biology
Journal Article
6, pp. 13 - 21 (2020)
Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. Nature Plants
Journal Article
11 (1), 989 (2020)
Chromosome-level assemblies of multiple Arabidopsis genomes reveal hotspots of rearrangements with altered evolutionary dynamics. Nature Communications
Journal Article
Mutagenesis of a Quintuple Mutant Impaired in Environmental Responses Reveals Roles for CHROMATIN REMODELING4 in the Arabidopsis Floral Transition. The Plant Cell (2020)
Journal Article
11 (1), 253 (2020)
Extreme genetic signatures of local adaptation during Lotus japonicus colonization of Japan. Nature Communications 2019
Journal Article
116 (24), pp. 12078 - 12083 (2019)
Genetic and molecular analysis of trichome development in Arabis alpina. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
28 (17), pp. 3887 - 3901 (2019)
Strengths and potential pitfalls of hay transfer for ecological restoration revealed by RAD-seq analysis in floodplain Arabis species. Molecular Ecology
Journal Article
20 (1), 277 (2019)
SyRI: finding genomic rearrangements and local sequence differences from whole-genome assemblies. Genome Biology: Biology for the Post-Genomic Era
Journal Article
5 (8), pp. 846 - 855 (2019)
Interspecies association mapping links reduced CG to TG substitution rates to the loss of gene-body methylation. Nature Plants
Journal Article
8 (12), 599 (2019)
The Striking Flower-in-Flower Phenotype of Arabidopsis thaliana Nossen (No-0) is Caused by a Novel LEAFY Allele. PLANTS-BASEL
Journal Article
Mutations in the miR396 binding site of the growth-regulating factor gene VvGRF4 modulate inflorescence architecture in grapevine. The Plant Journal (2019)
Journal Article
10, 4310 (2019)
Linked-read sequencing of gametes allows efficient genome-wide analysis of meiotic recombination. Nature Communications 2018
Journal Article
30 (11), pp. 2838 - 2854 (2018)
The U1 snRNP Subunit LUC7 Modulates Plant Development and Stress Responses via Regulation of Alternative Splicing. The Plant Cell
Journal Article
28 (2), pp. 303 - 310.e3 (2018)
Brassinosteroids Dominate Hormonal Regulation of Plant Thermomorphogenesis via BZR1. Current Biology
Journal Article
34 (4), pp. 550 - 557 (2018)
findGSE: estimating genome size variation within human and Arabidopsis using k-mer frequencies. Bioinformatics 2017
Journal Article
27 (5), pp. 778 - 786 (2017)
Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research
Journal Article
36, pp. 64 - 70 (2017)
The impact of third generation genomic technologies on plant genome assembly. Current Opinion in Plant Biology
Journal Article
36, pp. IV - V (2017)
Editorial overview: Genome studies and molecular genetics. Current Opinion in Plant Biology
Journal Article
114 (18), pp. 4833 - 4838 (2017)
Ctf4-related protein recruits LHP1-PRC2 to maintain H3K27me3 levels in dividing cells in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America 2016
Journal Article
113 (32), pp. 9111 - 9116 (2016)
On the origin and evolutionary consequences of gene body DNA methylation. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
11 (6), e0157779 (2016)
cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One
Journal Article
88 (2), pp. 159 - 178 (2016)
Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal
Journal Article
7, 13299 (2016)
A multi-marker association method for genome-wide association studies without the need for population structure correction. Nature Communications
Journal Article
2 (2), 16003 (2016)
Plant genic methylation: Conserved for 400 million years. Nature Plants
Journal Article
12 (4), e1005990 (2016)
Arabidopsis thaliana DM2h (R8) within the Landsberg RPP1-like Resistance Locus Underlies Three Different Cases of EDS1-Conditioned Autoimmunity. PLoS Genetics
Journal Article
7, 13522 (2016)
UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana. Nature Communications
Journal Article
113 (28), pp. E4052 - E4060 (2016)
Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proceedings of the National Academy of Sciences of the United States of America
Journal Article
28 (1), pp. 87 - 101 (2016)
Complementary Activities of TELOMERE REPEAT BINDING Proteins and Polycomb Group Complexes in Transcriptional Regulation of Target Genes. Plant Cell 2015
Journal Article
169 (3), pp. 2187 - 99 (2015)
Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE. Plant physiology