Publications of R. S. Smith

Journal Article (44)

2024
Journal Article
Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)
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Li, X.-M.; Jenke, H.; Strauß, S.; Wang, Y.; Bhatia, N.; Kierzkowski, D.; Lymbouridou, R.; Huijser, P.; Smith, R. S.; Runions, A. et al.; Tsiantis, M.: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification. Current Biology 34 (19), pp. 4547 - 4558.e9 (2024)
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Mosca, G.; Eng, R. C.; Adibi, M.; Yoshida, S.; Lane, B.; Bergheim, L.; Weber, G.; Smith, R. S.; Hay, A.: Growth and tension in explosive fruit. Current Biology 34, pp. 1010 - 1022.e4 (2024)
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Vijayan, A.; Mody, T. A.; Yu, Q.; Wolny, A.; Cerrone, L.; Strauss, S.; Tsiantis, M.; Smith, R. S.; Hamprecht, F. A.; Kreshuk, A. et al.; Schneitz, K.: A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context. Development 151 (14), dev202800 (2024)
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2022
Journal Article
Liu, S.; Strauss, S.; Adibi, M.; Mosca, G.; Yoshida, S.; Dello Ioio, R.; Runions, A.; Andersen, T. G.; Grossmann, G.; Huijser, P. et al.; Smith, R. S.; Tsiantis, M.: Cytokinin promotes growth cessation in the Arabidopsis root. Current Biology 32 (9), pp. 1974 - 1985 (2022)
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Strauß, S.; Runions, A.; Lane, B.; Eschweiler, D.; Bajpai, N.; Trozzi, N.; Routier-Kierzkowska, A.-L.; Yoshida, S.; Rodrigues da Silveira, S.; Vijayan, A. et al.; Tofanelli, R.; Majda, M.; Echevin, E.; Le Gloanec, C.; Bertrand-Rakusova, H.; Adibi, M.; Schneitz, K.; Bassel, G. W.; Kierzkowski, D.; Stegmaier, J.; Tsiantis, M.; Smith, R. S.: Using positional information to provide context for biological image analysis with MorphoGraphX 2.0. ELIFE 11, e72601 (2022)
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Vijayan, A.; Strauß, S.; Tofanelli, R.; Mody, T. A.; Lee, K.; Tsiantis, M.; Smith, R. S.; Schneitz, K.: The annotation and analysis of complex 3D plant organs using 3DCoordX. Plant Physiology 189 (3), pp. 1278 - 1295 (2022)
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2021
Journal Article
Fridman, Y.; Strauß, S.; Horev, G.; Ackerman-Lavert, M.; Reiner-Benaim, A.; Lane, B.; Smith, R. S.; Savaldi-Goldstein, S.: The root meristem is shaped by brassinosteroid control of cell geometry. Nature Plants 7 (11), pp. 1475 - 1484 (2021)
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Vaddepalli, P.; de Zeeuw, T.; Strauß, S.; Buerstenbinder, K.; Liao, C.-Y.; Ramalho, J. J.; Smith, R. S.; Weijers, D.: Auxin-dependent control of cytoskeleton and cell shape regulates division orientation in the Arabidopsis embryo. Current Biology 31 (22), pp. 4946 - 4955.e4 (2021)
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Vijayan, A.; Tofanelli, R.; Strauß, S.; Cerrone, L.; Wolny, A.; Strohmeier, J.; Kreshuk, A.; Hamprecht, F. A.; Smith, R. S.; Schneitz, K.: A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule. eLife 10, e63262 (2021)
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2020
Journal Article
Kinoshita, A.; Vayssières, A.; Richter, R.; Sang, Q.; Roggen, A.; van Driel, A. D.; Smith, R. S.; Coupland, G.: Regulation of shoot meristem shape by photoperiodic signaling and phytohormones during floral induction of Arabidopsis. eLife 9, e60661 (2020)
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Strauss, S.; Lempe, J.; Prusinkiewicz, P.; Tsiantis, M.; Smith, R. S.: Phyllotaxis: is the golden angle optimal for light capture? New Phytologist 225 (1), pp. 499 - 510 (2020)
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Zhu, M.; Chen, W.; Mirabet, V.; Hong, L.; Bovio, S.; Strauß, S.; Schwarz, E. M.; Tsugawa, S.; Wang, Z.; Smith, R. S. et al.; Li, C.-B.; Hamant, O.; Boudaoud, A.; Roeder, A. H. K.: Robust organ size requires robust timing of initiation orchestrated by focused auxin and cytokinin signalling. Nature Plants 6, pp. 686 - 698 (2020)
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2019
Journal Article
Jackson, M. D. B.; Duran-Nebreda, S.; Kierzkowski, D.; Strauß, S.; Xu, H.; Landrein, B.; Hamant, O.; Smith, R. S.; Johnston, I. G.; Bassel, G. W.: Global Topological Order Emerges through Local Mechanical Control of Cell Divisions in the Arabidopsis Shoot Apical Meristem. Cell Systems 8 (1), pp. 53 - 65.3e (2019)
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Kierzkowski, D.; Runions, A.; Vuolo, F.; Strauß, S.; Lymbouridou, R.; Routier-Kierzkowska, A.-L.; Wilson Sánchez, D.; Jenke, H.; Galinha, C.; Mosca, G. et al.; Zhang, Z.; Canales, C.; Dello Ioio, R.; Huijser, P.; Smith, R. S.; Tsiantis, M.: A Growth-Based Framework for Leaf Shape Development and Diversity. Cell (2019)
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Montenegro-Johnson, T.; Strauss, S.; Jackson, M. D. B.; Walker, L.; Smith, R. S.; Bassel, G. W.: 3DCellAtlas Meristem: a tool for the global cellular annotation of shoot apical meristems. Plant Methods 15, 33 (2019)
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Sapala, A.; Runions, A.; Smith, R. S.: Mechanics, geometry and genetics of epidermal cell shape regulation: different pieces of the same puzzle. Current Opinion in Plant Biology 47, pp. 1 - 8 (2019)
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Yoshida, S.; Van der Schuren, A.; van Dop, M.; van Galen, L.; Saiga, S.; Adibi, M.; Moller, B.; ten Hove, C. A.; Marhavy, P.; Smith, R. S. et al.; Friml, J.; Weijers, D.: A SOSEKI-based coordinate system interprets global polarity cues in Arabidopsis. Nature Plants 5 (2), pp. 160 - 166 (2019)
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2018
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Bhosale, R.; Boudolf, V.; Cuevas, F.; Lu, R.; Eekhout, T.; Hu, Z.; Van Isterdael, G.; Lambert, G. M.; Xu, F.; Nowack, M.K. et al.; Smith, R. S.; Vercauteren, I.; De Rycke, R.; Storme, V.; Beeckman, T.; Larkin, J. C.; Kremer, A.; Hofte, H.; Galbraith, D.W.; Kumpf, R. P.; Maere, S.; De Veylder, L.: A Spatiotemporal DNA Endoploidy Map of the Arabidopsis Root Reveals Roles for the Endocycle in Root Development and Stress Adaptation. The Plant Cell 30 (10), pp. 2330 - 2351 (2018)
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Monniaux, M.; Pieper, B.; McKim, S. M.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Smith, R. S.; Hay, A.: The role of APETALA1 in petal number robustness. eLife 7, e39399 (2018)
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Sapala, A.; Runions, A.; Routier-Kierzkowska, A.-L.; Das Gupta, M.; Hong, L.; Hofhuis, H.; Verger, S.; Mosca, G.; Li, C.-B.; Hay, A. et al.; Hamant, O.; Roeder, A.H.K.; Tsiantis, M.; Prusinkiewicz, R.; Smith, R. S.: Why plants make puzzle cells, and how their shape emerges. eLife 7, e32794 (2018)
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2017
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Hervieux, N.; Tsugawa, S.; Fruleux, A.; Dumond, M.; Routier-Kierzkowska, A.-L.; Komatsuzaki, T.; Boudaoud, A.; Larkin, J. C.; Smith, R. S.; Li, C.-B. et al.; Hamant, O.: Mechanical Shielding of Rapidly Growing Cells Buffers Growth Heterogeneity and Contributes to Organ Shape Reproducibility. Current Biology 27 (22), pp. 3468 - 3479.e4 (2017)
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Jones, A.; Forero-Vargas, M.; Withers, S. P.; Smith, R. S.; Traas, J.; Dewitte, W.; Murray, J. A. H.: Cell-size dependent progression of the cell cycle creates homeostasis and flexibility of plant cell size. Nature Communications 8, 15060 (2017)
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McKim, S. M.; Routier-Kierzkowska, A.-L.; Monniaux, M.; Kierzkowski, D.; Pieper, B.; Smith, R. S.; Tsiantis, M.; Hay, A.: Seasonal Regulation of Petal Number. Plant Physiology 175 (2), pp. 886 - 903 (2017)
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Mosca, G.; Sapala, A.; Strauß, S.; Routier-Kierzkowska, A.-L.; Smith, R. S.: On the micro-indentation of plant cells in a tissue context. Physical Biology 14 (1), 015003 (2017)
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Stamm, P.; Strauß, S.; Montenegro-Johnson, T. D.; Smith, R. S.; Bassel, G. W.: In Silico Methods for Cell Annotation, Quantification of Gene Expression, and Cell Geometry at Single-Cell Resolution Using 3DCellAtlas. PLANT HORMONES: METHODS AND PROTOCOLS, 3RD EDITION, pp. 99 - 123 (2017)
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Tsugawa, S.; Hervieux, N.; Kierzkowski, D.; Routier-Kierzkowska, A.-L.; Sapala, A.; Hamant, O.; Smith, R. S.; Roeder, A. H. K.; Boudaoud, A.; Li, C.-B.: Clones of cells switch from reduction to enhancement of size variability in Arabidopsis sepals. Development 144 (23), pp. 4398 - 4405 (2017)
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2016
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Bassel, G. W.; Smith, R. S.: Quantifying morphogenesis in plants in 4D. Current Opinion in Plant Biology 29, pp. 87 - 94 (2016)
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Hervieux, N.; Dumond, M.; Sapala, A.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Roeder, A. H. K.; Smith, R. S.; Boudaoud, A.; Hamant, O.: A Mechanical Feedback Restricts Sepal Growth and Shape in Arabidopsis. Current Biology 26 (8), pp. 1019 - 1028 (2016)
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Hofhuis, H.; Moulton, D.; Lessinnes, T.; Routier-Kierzkowska, A.-L.; Bomphrey, R.J.; Mosca, G.; Reinhardt, H.; Sarchet, P.; Gan, X.; Tsiantis, M. et al.; Ventikos, Y.; Walker, S.; Goriely, A.; Smith, R. S.; Hay, A.: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166 (1), pp. 222 - 33 (2016)
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Hong, L.; Dumond, M.; Tsugawa, S.; Sapala, A.; Routier-Kierzkowska, A.-L.; Zhou, Y.; Chen, C.; Kiss, A.; Zhu, M.; Hamant, O. et al.; Smith, R. S.; Komatsuzaki, T.; Li, C.-B.; Boudaoud, A.; Roeder, A. H. K.: Variable Cell Growth Yields Reproducible Organ Development through Spatiotemporal Averaging. Developmental Cell 38 (1), pp. 15 - 32 (2016)
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Kirchhelle, C.; Chow, C.-M.; Foucart, C.; Neto, H.; Stierhof, Y.-D.; Kalde, M.; Walton, C.; Fricker, M.; Smith, R. S.; Jerusalem, A. et al.; Irani, N.; Moore, I.: The Specification of Geometric Edges by a Plant Rab GTPase Is an Essential Cell-Patterning Principle During Organogenesis in Arabidopsis. Developmental Cell 36 (4), pp. 386 - 400 (2016)
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Martinez, C. C.; Chitwood, D. H.; Smith, R. S.; Sinha, N. R.: Left-right leaf asymmetry in decussate and distichous phyllotactic systems. Philosophical Transactions of the Royal Society B: Biological Sciences 371, 20150412 (2016)
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Scheuring, D.; Loefke, C.; Krueger, F.; Kittelmann, M.; Eisa, A.; Hughes, L.; Smith, R. S.; Hawes, C.; Schumacher, K.; Kleine-Vehn, J.: Actin-dependent vacuolar occupancy of the cell determines auxin-induced growth repression. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 113 (2), pp. 452 - 457 (2016)
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Tsugawa, S.; Hervieux, N.; Hamant, O.; Boudaoud, A.; Smith, R. S.; Li, C.-B.; Komatsuzaki, T.: Extracting Subcellular Fibrillar Alignment with Error Estimation: Application to Microtubules. BIOPHYSICAL JOURNAL 110 (8), pp. 1836 - 1844 (2016)
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von Wangenheim, D.; Fangerau, J.; Schmitz, A.; Smith, R. S.; Leitte, H.; Stelzer, E. H. K.; Maizel, A.: Rules and Self-Organizing Properties of Post-embryonic Plant Organ Cell Division Patterns. Current Biology 26 (4), pp. 439 - 449 (2016)
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Zadnikova, P.; Wabnik, K.; Abuzeineh, A.; Gallemi, M.; Van Der Straeten, D.; Smith, R. S.; Inze, D.; Friml, J.; Prusinkiewicz, P.; Benkova, E.: A Model of Differential Growth-Guided Apical Hook Formation in Plants. Plant Cell 28 (10), pp. 2464 - 2477 (2016)
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2015
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Montenegro-Johnson, T. D.; Stamm, P.; Strauss, S.; Topham, A. T.; Tsagris, M.; Wood, A. T. A.; Smith, R. S.; Bassel, G. W.: Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas. Plant Cell 27 (4), pp. 1018 - 1033 (2015)
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Tauriello, G.; Meyer, H. M.; Smith, R. S.; Koumoutsakos, P.; Roeder, A. H. K.: Variability and Constancy in Cellular Growth of Arabidopsis Sepals. Plant Physiology 169 (4), pp. 2342 - 2358 (2015)
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Weber, A.; Braybrook, S.; Huflejt, M.; Mosca, G.; Routier-Kierzkowska, A.-L.; Smith, R. S.: Measuring the mechanical properties of plant cells by combining micro-indentation with osmotic treatments. Journal of Experimental Botany 66 (11), pp. 3229 - 3241 (2015)
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2014
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Bassel, G. W.; Stamm, P.; Mosca, G.; Barbier de Reuille, P.; Gibbs, D. J.; Winter, R.; Janka, A.; Holdsworth, M. J.; Smith, R. S.: Mechanical constraints imposed by 3D cellular geometry and arrangement modulate growth patterns in the Arabidopsis embryo. Proceedings of the National Academy of Sciences of the United States of America 111 (23), pp. 8685 - 8690 (2014)
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Vlad, D.; Kierzkowski, D.; Rast, M. I.; Vuolo, F.; Dello Ioio, R.; Galinha, C.; Gan, X.; Hajheidari, M.; Hay, A.; Smith, R. S. et al.; Huijser, P.; Bailey, C. D.; Tsiantis, M.: Leaf Shape Evolution Through Duplication, Regulatory Diversification, and Loss of a Homeobox Gene. Science 343 (6172), pp. 780 - 783 (2014)
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Yoshida, S.; Barbier de Reuille, P.; Lane, B.; Bassel, G. W.; Prusinkiewicz, P.; Smith, R. S.; Weijers, D.: Genetic Control of Plant Development by Overriding a Geometric Division Rule. Developmental Cell 29 (1), pp. 75 - 87 (2014)
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2013
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Wabnik, K.; Robert, H. S.; Smith, R. S.; Friml, J.: Modeling Framework for the Establishment of the Apical-Basal Embryonic Axis in Plants. Current Biology 23 (24), pp. 2513 - 2518 (2013)
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Book Chapter (4)

2019
Book Chapter
Majda, M.; Sapala, A.; Routier-Kierzkowska, A.-L.; Smith, R. S.: Cellular Force Microscopy to Measure Mechanical Forces in Plant Cells. In: Plant Cell Morphogenesis: Methods and Protocols, 2nd Edition, pp. 215 - 230. Humana Press, New York, NY (2019)
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Book Chapter
Strauss, S.; Sapala, A.; Kierzkowski, D.; Smith, R. S.: Quantifying Plant Growth and Cell Proliferation with MorphoGraphX. In: Plant Cell Morphogenesis: Methods and Protocols, 2nd Edition, pp. 269 - 290. HUMANA PRESS, New York, NJ (2019)
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2014
Book Chapter
Barbier de Reuille, P.; Robinson, S.; Smith, R. S.: Quantifying Cell Shape and Gene Expression in the Shoot Apical Meristem Using MorphoGraphX. In: PLANT CELL MORPHOGENESIS, Vol. 1080, pp. 121 - 134. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
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Book Chapter
Routier-Kierzkowska, A.-L.; Smith, R. S.: Mechanical Measurements on Living Plant Cells by Micro-indentation with Cellular Force Microscopy. In: PLANT CELL MORPHOGENESIS, pp. 135 - 146. HUMANA PRESS INC, 999 RIVERVIEW DR, STE 208, TOTOWA, NJ 07512-1165 USA (2014)
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