Publications of M. Koornneef

Journal Article (84)

2024
Journal Article
Sajeev, N.; Koornneef, M.; Bentsink, L.: A commitment for life: Decades of unraveling the molecular mechanisms behind seed dormancy and germination. The Plant Cell, koad328, pp. 1 - 19 (2024)
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2021
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Jiao, W.-B.; Patel, V.; Klasen, J. R.; Liu, F.; Pecinkova, P.; Ferrand, M.; Gy, I.; Camilleri, C.; Effgen, S.; Koornneef, M. et al.; Pecinka, A.; Loudet, O.; Schneeberger, K.: The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Molecular Biology and Evolution 38 (4), pp. 1225 - 1240 (2021)
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Koornneef, M.: A Central Role for Genetics in Plant Biology. Annual Review of Plant Biology 72, pp. 1 - 16 (2021)
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2020
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Flood, P.; Theeuwen, T. P. J. M.; Schneeberger, K.; Keizer, P.; Kruijer, W.; Severing, E.; Kouklas, E.; Hageman, J. A.; Wijfjes, R.; Calvo-Baltanas, V. et al.; Becker, F. F. M.; Schnabel, S. K.; Willems, L. A. J.; Ligterink, W.; van Arkel, J.; Mumm, R.; Gualberto, J. M.; Savage, L.; Kramer, D. M.; Keurentjes, J. J. B.; van Eeuwijk, F.; Koornneef, M.; Harbinson, J.; Aarts, M. G. M.; Wijnker, E.: Reciprocal cybrids reveal how organellar genomes affect plant phenotypes. Nature Plants 6, pp. 13 - 21 (2020)
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Wang, Y.; Severing, E.; Koornneef, M.; Aarts, M. G. M.: FLC and SVP Are Key Regulators of Flowering Time in the Biennial/Perennial Species Noccaea caerulescens. Frontiers in Plant Science 11, 582577 (2020)
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2018
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Fulgione, A.; Koornneef, M.; Roux, F.; Hermisson, J.; Hancock, A. M.: Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia. Molecular Biology and Evolution 35 (3), pp. 564 - 574 (2018)
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Mueller, N.A.; Zhang, L.; Koornneef, M.; Jiménez-Gómez, J. M.: Mutations in EID1 and LNK2 caused light-conditional clock deceleration during tomato domestication. Proceedings of the National Academy of Sciences of the United States of America 115 (27), pp. 7135 - 7140 (2018)
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Wozny, D.; Kramer, K.; Finkemeier, I.; Acosta, I.; Koornneef, M.: Genes for seed longevity in barley identified by genomic analysis on near isogenic lines. Plant, Cell and Environment 41 (8), pp. 1895 - 1911 (2018)
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2017
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Ariga, H.; Katori, T.; Tsuchimatsu, T.; Hirase, T.; Tajima, Y.; Parker, J. E.; Alcázar, R.; Koornneef, M.; Hoekenga, O.; Lipka, A. E. et al.; Gore, M. A.; Sakakibara, H.; Kojima, M.; Kobayashi, Y.; Iuchi, S.; Kobayashi, M.; Shinozaki, K.; Sakata, Y.; Hayashi, T.; Saijo, Y.; Taji, T.: NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature Plants 3, 17072 (2017)
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Rishmawi, L.; Bühler, J.; Jaegle, B.; Hülskamp, M.; Koornneef, M.: Quantitative trait loci controlling leaf venation in Arabidopsis. Plant, Cell and Environment 40 (8), pp. 1429 - 1441 (2017)
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van Esse, W.; Walla, A.; Finke, A.; Koornneef, M.; Pecinka, A.; von Korff, M.: Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174 (4), pp. 2397 - 2408 (2017)
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2016
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Fransz, P.; Linc, G.; Lee, C.-R.; Aflitos, S. A.; Lasky, J. R.; Toomajian, C.; Ali, H.; Peters, J.; van Dam, P.; Ji, X. et al.; Kuzak, M.; Gerats, T.; Schubert, I.; Schneeberger, K.; Colot, V.; Martienssen, R.; Koornneef, M.; Nordborg, M.; Juenger, T. E.; de Jong, H.; Schranz, M. E.: Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana. The Plant Journal 88 (2), pp. 159 - 178 (2016)
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He, F.; Arce, A. L.; Schmitz, G.; Koornneef, M.; Novikova, P.; Beyer, A.; de Meaux, J.: The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus. Molecular Biology and Evolution 33 (8), pp. 2088 - 2101 (2016)
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Horton, M. W.; Willems, G.; Sasaki, E.; Koornneef, M.; Nordborg, M.: The genetic architecture of freezing tolerance varies across the range of Arabidopsis thaliana. Plant Cell Environment 39 (11), pp. 2570 - 2579 (2016)
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Klasen, J. R.; Barbez, E.; Meier, L.; Meinshausen, N.; Buehlmann, P.; Koornneef, M.; Busch, W.; Schneeberger, K.: A multi-marker association method for genome-wide association studies without the need for population structure correction. Nature Communications 7, 13299 (2016)
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Zapata, L.; Ding, J.; Willing, E.-M.; Hartwig, B.; Bezdan, D.; Jiao, W.-B.; Patel, V.; James, G. V.; Koornneef, M.; Ossowski, S. et al.; Schneeberger, K.: Chromosome-level assembly of Arabidopsis thaliana Ler reveals the extent of translocation and inversion polymorphisms. Proceedings of the National Academy of Sciences of the United States of America 113 (28), pp. E4052 - E4060 (2016)
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2015
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Barboza Barquero, L.; Nagel, K.A.; Jansen , M.; Klasen, J. R.; Kastenholz, B.; Braun, S.; Bleise, B.; Brehm, T.; Koornneef, M.; Fiorani, F.: Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water limiting conditions is independent from the GA5 loss-of-function alleles. Annals of Botany (116), pp. 321 - 331 (2015)
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Bühler, J.; Rishmawi, L.; Pflugfelder, D.; Huber, G.; Scharr, H.; Hülskamp, M.; Koornneef, M.; Schurr, U.; Jahnke, S.: phenoVein - A tool for leaf vein segmentation and analysis. Plant Physiology 169 (4), pp. 2359 - 2370 (2015)
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El-Soda, M.; Kruijer, W.; Malosetti, M.; Koornneef, M.; Aarts, M. G. M.: Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought. Plant, Cell and Environment 38 (3), pp. 585 - 599 (2015)
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Ilk, N.; Ding, J.; Ihnatowicz, A.; Koornneef, M.; Reymond, M.: Natural variation for anthocyanin accumulation under high-light and low-temperature stress is attributable to the ENHANCER OF AG-4 2 (HUA2) locus in combination with PRODUCTION OF ANTHOCYANIN PIGMENT1 (PAP1) and PAP2. New Phytologist 206 (1), pp. 422 - 435 (2015)
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Koornneef, M.: Interview with Maarten Koornneef. Trends in Plant Science 20 (3), pp. 135 - 136 (2015)
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Liller, C.; Neuhaus, R.; von Korff, M.; Koornneef, M.; van Esse, W.: Mutations in Barley Row Type Genes Have Pleiotropic Effects on Shoot Branching. PLoS One 10 (10), e0140246 (2015)
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2014
Journal Article
Alcazar, R.; von Reth, M.; Bautor, J.; Chae, E.; Weigel, D.; Koornneef, M.; Parker, J.: Analysis of a Plant Complex Resistance Gene Locus Underlying Immune-Related Hybrid Incompatibility and Its Occurrence in Nature. PLoS Genetics 10 (12), e1004848 (2014)
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El-Soda, M.; Boer, M. P.; Bagheri, H.; Hanhart, C. J.; Koornneef, M.; Aarts, M. G. M.: Genotypeenvironment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes. Journal of Experimental Botany 65 (2), pp. 697 - 708 (2014)
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El-Soda, M.; Malosetti, M.; Zwaan, B. J.; Koornneef, M.; Aarts, M. G. M.: Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis. Trends in Plant Science 19 (6), pp. 390 - 398 (2014)
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Ihnatowicz, A.; Siwinska, J.; Meharg, A. A.; Carey, M.; Koornneef, M.; Reymond, M.: Conserved histidine of metal transporter AtNRAMP1 is crucial for optimal plant growth under manganese deficiency at chilling temperatures. New Phytologist 202 (4), pp. 1173 - 1183 (2014)
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2013
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Barboza, L.; Effgen, S.; Alonso-Blanco, C.; Kooke, R.; Keurentjes, J. J. B.; Koornneef, M.; Alcázar, R.: Arabidopsis semidwarfs evolved from independent mutations in GA20ox1, ortholog to green revolution dwarf alleles in rice and barley. Proceedings of the National Academy of Sciences of the United States of America 110 (39), pp. 15818 - 15823 (2013)
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Debieu, M.; Tang, C.; Stich, B.; Sikosek, T.; Effgen, S.; Josephs, E.; Schmitt, J.; Nordborg, M.; Koornneef, M.; de Meaux, J.: Co-Variation between Seed Dormancy, Growth Rate and Flowering Time Changes with Latitude in Arabidopsis thaliana. PLOS ONE 8 (5), e61075 (2013)
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Fournier-Level, A.; Wilczek, A. M.; Cooper, M. D.; Roe, J. L.; Anderson, J.; Eaton, D.; Moyers, B. T.; Petipas, R. H.; Schaeffer, R. N.; Pieper, B. et al.; Reymond, M.; Koornneef, M.; Welch, S. M.; Remington, D. L.; Schmitt, J.: Paths to selection on life history loci in different natural environments across the native range of Arabidopsis thaliana. Molecular Ecology 22 (13), pp. 3552 - 3566 (2013)
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Huang, X.; Ding, J.; Effgen, S.; Turck, F.; Koornneef, M.: Multiple loci and genetic interactions involving flowering time genes regulate stem branching among natural variants of Arabidopsis. New Phytologist 199 (3), pp. 843 - 857 (2013)
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Wijnker, E.; James, G. V.; Ding, J.; Becker, F.; Klasen, J. R.; Rawat, V.; Rowan, B. A.; de Jong, D. F.; de Snoo, C. B.; Zapata, L. et al.; Huettel, B.; de Jong, H.; Ossowski, S.; Weigel, D.; Koornneef, M.; Keurentjes, J. J. B.; Schneeberger, K.: The genomic landscape of meiotic crossovers and gene conversions in Arabidopsis thaliana. ELIFE 2, e01426 (2013)
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2012
Journal Article
Alcázar, R.; Pecinka, A.; Aarts, M. G. M.; Fransz, P. F.; Koornneef, M.: Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology 15 (2), pp. 205 - 211 (2012)
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Bagheri, H.; El-Soda, M.; van Oorschot, I.; Hanhart, C.; Bonnema, G.; Jansen-van den Bosch, T.; Mank, R.; Keurentjes, J.; Meng, L.; Wu, J. et al.; Koornneef, M.; Aarts, M. G. M.: Genetic analysis of morphological traits in a new, versatile, rapid-cycling Brassica rapa recombinant inbred line population. Frontiers in Plant Genetics and Genomics 3, 00183 (2012)
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Huang, X.; Effgen, S.; Meyer, R. C.; Theres, K.; Koornneef, M.: Epistatic Natural Allelic Variation Reveals a Function of AGAMOUS-LIKE6 in Axillary Bud Formation in Arabidopsis. Plant Cell 24 (6), pp. 2364 - 2379 (2012)
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Koornneef, M.: My favourite flowering image. Journal of Experimental Botany 64, doi: 10.1093/jxb/err413, pp. 5801 - 5803 (2012)
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2011
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Chiang, G. C. K.; Bartsch, M.; Barua, D.; Nakabayashi, K.; Debieu, M.; Kronholm, I.; Koornneef, M.; Soppe, W.; Donohue, K.; de Meaux, J.: DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana. Molecular Ecology 20 (16), pp. 3336 - 3349 (2011)
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Huang, X.; Paulo, M.-J.; Boer, M.; Effgen, S.; Keizer, K.; Koornneef, M.; van Eeuwijk, F. A.: Analysis of natural allelic variation in Arabidopsis using a multiparent recombinant inbred line population. Proceedings of the National Academy of Sciences 108 (11), 10.1073/pnas.1100465108, pp. 4488 - 4493 (2011)
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Keurentjes, J. J. B.; Willems, G.; van Eeuwijk, F.; Nordborg, M.; Koornneef, M.: A comparison of population types used for QTL mapping in Arabidopsis thaliana. Plant Genetic Resources: Characterization and Utilization 9, doi:10.1017/S1479262111000086, pp. 185 - 188 (2011)
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Silady, R. A.; Effgen, S.; Koornneef, M.; Reymond, M.: Variation in Seed Dormancy Quantitative Trait Loci in Arabidopsis thaliana Originating from One Site. PLoS ONE 6 (6), e20886 (2011)
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van Zanten, M.; Koini, M. A.; Geyer, R.; Liu, Y.; Brambilla, V.; Bartels, D.; Koornneef, M.; Fransz, P.; Soppe, W. J. J.: Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 108 (50), pp. 20219 - 20224 (2011)
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2010
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Alcázar, R.; Garcia, A. V.; Kronholm, I.; de Meaux, J.; Koornneef, M.; Parker, J. E.; Reymond, M.: Natural variation at Strubbelig Receptor Kinase 3 drives immune-triggered incompatibilities between Arabidopsis thaliana accessions. Nature Genetics 42, doi:10.1038/ng.704, pp. 1135 - 1139 (2010)
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Bentsink, L.; Hanson, J.; Hanhart, C. J.; Blankestijn-De Vries, H.; Coltrane, C.; Keizer, P.; El-Lithy, M.; Alonso-Blanco, C.; de Andrés, M. T.; Reymond, M. et al.; van Eeuwijk, F.; Smeekens, S.; Koornneef, M.: Natural variation for seed dormancy in Arabidopsis is regulated by additive genetic and molecular pathways. Proceedings of the National Academy of Sciences 107, 10.1073/pnas.1000410107, pp. 4264 - 4269 (2010)
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El-Lithy, M. E.; Reymond, M.; Stich, B.; Koornneef, M.; Vreugdenhil, D.: Relation among plant growth, carbohydrates and flowering time in the Arabidopsis Landsberg erecta × Kondara recombinant inbred line population. Plant, Cell & Environment 33, 10.1111/j.1365-3040.2010.02155.x, pp. 1369 - 1382 (2010)
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Huang, X.; Schmitt, J.; Dorn, L.; Griffiths, C.; Effgen, S.; Takao, S.; Koornneef, M.; Donohue, K.: The earliest stages of adaptation in an experimental plant population: strong selection on QTLS for seed dormancy. Molecular Ecology 19, pp. 1335 - 1351 (2010)
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Jansen, M. A. K.; Le Martret, B.; Koornneef, M.: Variations in constitutive and inducible UV-B tolerance; dissecting photosystem II protection in Arabidopsis thaliana accessions. Physiologia Plantarum 138 (1), pp. 22 - 34 (2010)
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Koornneef, M.; Meinke, D.: The development of Arabidopsis as a model plant. SPECIAL ISSUE Arabidopsis: A rich harvest 10 years after completion of the genome sequence, 10.1111/j.1365-313X.2009.04086.x, pp. 909 - 921 (2010)
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Sugliani, M.; Brambilla, V.; Clerkx, E. J. M.; Koornneef, M.; Soppe, W. J. J.: The Conserved Splicing Factor SUA Controls Alternative Splicing of the Developmental Regulator ABI3 in Arabidopsis. Plant Cell 22 (6), pp. 1936 - 1946 (2010)
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2009
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Alonso-Blanco, C.; Aarts, M. G. M.; Bentsink, L.; Keurentjes, J. J. B.; Reymond, M.; Vreugdenhil, D.; Koornneef, M.: What Has Natural Variation Taught Us about Plant Development, Physiology, and Adaptation? Plant Cell 21, 10.1105/tpc.109.068114, pp. 1877 - 1896 (2009)
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Fu, J.; Keurentjes, J. J. B.; Bouwmeester, H.; America, T.; Verstappen, F. W. A.; Ward, J. L.; Beale, M. H.; de Vos, C. H. R.; Dijkstra, M.; Scheltema, R. A. et al.; Johannes, F.; Koornneef, M.; Vreugdenhil, D.; Breitling, R.; Jansen, R. C.: System-wide molecular evidence for phenotypic buffering in Arabidopsis. Nature Genetics 41 (2), pp. 166 - 167 (2009)
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Ghandilyan, A.; Barboza, L.; Tisné, S.; Granier, C.; Reymond, M.; Koornneef, M.; Schat, H.; Aarts, M. G. M.: Genetic analysis identifies quantitative trait loci controlling rosette mineral concentrations in Arabidopsis thaliana under drought. New Phytologist 184, 10.1111/j.1469-8137.2009.02953.x, pp. 180 - 192 (2009)
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