PhDs 2024

Publications of A. Pecinka

Journal Article (28)

2022
Journal Article
Prochazkova, K.; Finke, A.; Tomastikova, E. D.; Filo, J.; Bente, H.; Dvorak, P.; Ovecka, M.; Samaj, J.; Pecinka, A.: Zebularine induces enzymatic DNA protein crosslinks in 45S rDNA heterochromatin of Arabidopsis nuclei. Nucleic Acids Research (London) 50 (1), pp. 244 - 258 (2022)
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2021
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Jiao, W.-B.; Patel, V.; Klasen, J. R.; Liu, F.; Pecinkova, P.; Ferrand, M.; Gy, I.; Camilleri, C.; Effgen, S.; Koornneef, M. et al.; Pecinka, A.; Loudet, O.; Schneeberger, K.: The Evolutionary Dynamics of Genetic Incompatibilities Introduced by Duplicated Genes in Arabidopsis thaliana. Molecular Biology and Evolution 38 (4), pp. 1225 - 1240 (2021)
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2019
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Diaz, M.; Pecinkova, P.; Nowicka, A.; Baroux, C.; Sakamoto, T.; Gandha, P. Y.; Jerabkova, H.; Matsunaga, S.; Grossniklaus, U.; Pecinka, A.: The SMC5/6 Complex Subunit NSE4A Is Involved in DNA Damage Repair and Seed Development. The Plant Cell 31 (7), pp. 1579 - 1597 (2019)
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Finke, A.; Mandakova, T.; Nawaz, K.; Vu, G. T. H.; Novak, P.; Macas, J.; Lysak, M... A.; Pecinka, A.: Genome invasion by a hypomethylated satellite repeat in Australian crucifer Ballantinia antipoda. The Plant Journal 99 (6), pp. 1066 - 1079 (2019)
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Lazaro, A.; Zhou, Y.; Giesguth, M.; Nawaz, K.; Bergonzi, S.; Pecinka, A.; Coupland, G.; Albani, M.: PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina. Journal of Experimental Botany 70, pp. 949 - 961 (2019)
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Nowicka, A.; Tokarz, B.; Zwyrtkova, J.; Tomastikova, E. D.; Prochazkova, K.; Ercan, U.; Finke, A.; Rozhon, W.; Poppenberger, B.; Otmar, M. et al.; Niezgodzki, I.; Krecmerova, M.; Schubert, I.; Pecinka, A.: Comparative analysis of epigenetic inhibitors reveals different degrees of interference with transcriptional gene silencing and induction of DNA damage. Plant Journal (2019)
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2018
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Diaz, M.; Pecinka, A.: Scaffolding for Repair: Understanding Molecular Functions of the SMC5/6 Complex. GENES 9 (1), 36 (2018)
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Markus, C.; Pecinka, A.; Karan, R.; Barney, J. N.; Merotto Jr., A.: Epigenetic regulation - contribution to herbicide resistance in weeds? Pest Management Science 74 (2), pp. 275 - 281 (2018)
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Vuolo, F.; Kierzkowski, D.; Runions, A.; Hajheidari, M.; Mentink, R. A.; Das Gupta, M.; Zhang, Z.; Vlad, D.; Wang, Y.; Pecinka, A. et al.; Gan, X.; Hay, A.; Huijser, P.; Tsiantis, M.: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32, pp. 1361 - 1366 (2018)
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2017
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Baroux, C.; Pecinka, A.; Fuchs, J.; Kreth, G.; Schubert, I.; Grossniklaus, U.: Non-random chromosome arrangement in triploid endosperm nuclei. Chromosoma: Biology of the Nucleus, 10.1007/s00412-016-0578-5 (2017)
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Diaz, M.; Pecinka, A.: Seeds as Emerging Hotspot for Maintenance of Genome Stability. CYTOLOGIA 82 (5), pp. 467 - 470 (2017)
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Journal Article
van Esse, W.; Walla, A.; Finke, A.; Koornneef, M.; Pecinka, A.; von Korff, M.: Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. Plant Physiology 174 (4), pp. 2397 - 2408 (2017)
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2016
Journal Article
Pietzenuk, B.; Markus, C.; Gaubert, H.; Bagwan, N.; Merotto, A.; Bucher, E.; Pecinka, A.: Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements. GENOME BIOLOGY 17, 209 (2016)
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Willing, E.-M.; Piofczyk, T. P.; Albert, A.; Winkler, J. B.; Schneeberger, K.; Pecinka, A.: UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana. Nature Communications 7, 13522 (2016)
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2015
Journal Article
Cao, H. X.; Schmutzer, T.; Scholz, U.; Pecinka, A.; Schubert, I.; Vu, G. T. H.: Metatranscriptome analysis reveals host-microbiome interactions in traps of carnivorous Genlisea species. Frontiers in Microbiology 6, 526 (2015)
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Liu, C. H.; Finke, A.; Diaz, M.; Rozhon, W.; Poppenberger, B.; Baubec, T.; Pecinka, A.: Repair of DNA Damage Induced by the Cytidine Analog Zebularine Requires ATR and ATM in Arabidopsis. The Plant Cell 27 (6), pp. 1788 - 1800 (2015)
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Journal Article
Piofczyk, T. P.; Jeena, G.; Pecinka, A.: Arabidopsis thaliana natural variation reveals connections between UV radiation stress and plant pathogen-like defense responses. Plant Physiology and Biochemistry 93, pp. 34 - 43 (2015)
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Vu, G. T. H.; Schmutzer, T.; Bull, F.; Cao, H. X.; Fuchs, J.; Tran, T. D.; Jovtchev, G.; Pistrick, K.; Stein, N.; Pecinka, A. et al.; Neumann, P.; Novak, P.; Macas, J.; Dear, P.H.; Blattner, F. R.; Scholz, U.; Schubert, I.: Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus. Plant Genome 8 (3), pp. 1 - 14 (2015)
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Willing, E.-M.; Rawat, V.; Mandakova, T.; Maumus, F.; James, G. V.; Nordstroem, K.; Becker, C.; Warthmann, N.; Chica, C.; Szarzynska, B. et al.; Zytnicki, M.; Albani, M.; Kiefer, C.; Bergonzi, S.; Castaings, L.; Mateos, J. L.; Berns, M. C.; Bujdoso, N.; Piofczyk, T. P.; de Lorenzo, L.; Barrero-Sicilia, C.; Mateos, I.; Piednoel, M.; Hagmann, J.; Chen-Min-Tao, R.; Iglesias-Fernandez, R.; Schuster, S. C.; Alonso-Blanco, C.; Roudier, F.; Carbonero, P.; Paz-Ares, J.; Davis, S. J.; Pecinka, A.; Quesneville, H.; Colot, V.; Lysak, M. A.; Weigel, D.; Coupland, G.; Schneeberger, K.: Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1 (2), UNSP 14023, pp. 1 - 7 (2015)
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2014
Journal Article
Abdelsamad, A.; Pecinka, A.: Pollen-Specific Activation of Arabidopsis Retrogenes Is Associated with Global Transcriptional Reprogramming. The Plant Cell 26 (8), pp. 3299 - 3313 (2014)
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Baubec, T.; Finke, A.; Mittelsten Scheid, O.; Pecinka, A.: Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis. EMBO REPORTS 15 (4), pp. 446 - 452 (2014)
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Pecinka, A.; Liu, C. H.: Drugs for Plant Chromosome and Chromatin Research. Cytogenetic and genome research 143 (1-3), pp. 51 - 59 (2014)
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2013
Journal Article
Pecinka, A.; Abdelsamad, A.; Vu, G. T. H.: Hidden genetic nature of epigenetic natural variation in plants. Trends in Plant Science 18 (11), pp. 625 - 632 (2013)
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2012
Journal Article
Alcázar, R.; Pecinka, A.; Aarts, M. G. M.; Fransz, P. F.; Koornneef, M.: Signals of speciation within Arabidopsis thaliana in comparison with its relatives. Current Opinion in Plant Biology 15 (2), pp. 205 - 211 (2012)
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de Meaux, J.; Pecinka, A.: The Arabidopsis genus: An emerging model to elucidate the molecular basis of interspecific differences in transposable element activity. Mobile Genetic Elements 2, pp. 142 - 144 (2012)
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Pecinka, A.; Fang, W.; Rehmsmeier, M.; Levy, A. A.; Mittelsten Scheid, O.: Polyploidization increases meiotic recombination frequency in Arabidopsis (vol 10, 2012). BMC Biology 10, 33 (2012)
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Pecinka, A.; Levy, A.; Mittelsten Scheid, O.: Answer to Wang and Luo, "Polyploidization increases meiotic recombination frequency in Arabidopsis: a close look at statistical modelling and data analysis". BMC Biology 10, 33 (2012)
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Pecinka, A.; Mittelsten Scheid, O.: Stress-Induced Chromatin Changes: A Critical View on Their Heritability. Plant and Cell Physiology 53 (5), pp. 801 - 808 (2012)
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