Publications of R. Reinhardt

Journal Article

Pucker, B.; Holtgraewe, D.; Stadermann, K. B.; Frey, K.; Huettel, B.; Reinhardt, R.; Weisshaar, B.: A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set. PLoS One 14 (5), e0216233 (2019)

MPG.PuRe

2018

Journal Article

Hagemann, M.; Gaertner, K.; Scharnagl, M.; Bolay, P.; Lott, S. C.; Fuß, J.; Huettel, B.; Reinhardt, R.; Klaehn, S.; Hess, W. R.: Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp PCC 6803. DNA RESEARCH 25 (4), pp. 343 - 352 (2018)

MPG.PuRe

Journal Article

Wenzel, A.; Altmueller, J.; Ekici, A. B.; Popp, B.; Stueber, K.; Thiele, H.; Pannes, A.; Staubach, S.; Salido, E.; Nuernberg, P. et al.; Reinhardt, R.; Reis, A.; Rump, P.; Hanisch, F.-G.; Wolf, M. T. F.; Wiesener, M.; Huettel, B.; Beck, B. B.: Single molecule real time sequencing in ADTKD-MUC1 allows complete assembly of the VNTR and exact positioning of causative mutations. Scientific Reports 8, 4170 (2018)

MPG.PuRe

2017

Journal Article

Chao, Y.; Li, L.; Girodat, D.; Foerstner, K. U.; Said, N.; Corcoran, C.; Smiga, M.; Papenfort, K.; Reinhardt, R.; Wieden, H.-J. et al.; Luisi, B. F.; Vogel, J.: In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways. Molecular Cell 65 (1), pp. 39 - 51 (2017)

MPG.PuRe

Journal Article

Jiao, W.-B.; Garcia Accinelli, G.; Hartwig, B.; Kiefer, C.; Baker, D.; Severing, E.; Willing, E.-M.; Piednoel, M.; Woetzel, S.; Madrid-Herrero, E. et al.; Huettel, B.; Huemann, U.; Reinhardt, R.; Koch, M. A.; Swan, D.; Clavijo, B.; Coupland, G.; Schneeberger, K.: Improving and correcting the contiguity of long-read genome assemblies of three plant species using optical mapping and chromosome conformation capture data. Genome Research 27 (5), pp. 778 - 786 (2017)

MPG.PuRe

Journal Article

Metge, F.; Czaja-Hasse, L.; Reinhardt, R.; Dieterich, C.: FUCHS - towards full circular RNA characterization using RNAseq. PeerJ 5, e2934 (2017)

MPG.PuRe

Journal Article

Oral, M.; Colleter, J.; Bekaert, M.; Taggart, J. B.; Palaiokostas, C.; McAndrew, B. J.; Vandeputte, M.; Chatain, B.; Kuhl, H.; Reinhardt, R. et al.; Peruzzi, S.; Penman, D. J.: Gene-centromere mapping in meiotic gynogenetic European seabass. BMC Genomics 18, 449 (2017)

MPG.PuRe

Journal Article

Rast, P.; Gloeckner, I.; Boedeker, C.; Jeske, O.; Wiegand, S.; Reinhardt, R.; Schumann, P.; Rohde, M.; Spring, S.; Gloeckner, F. O. et al.; Jogler, C.; Jogler, M.: Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov in the Family Opitutaceae of the Verrucomicrobial Subdivision 4. Frontiers in Microbiology 8, 202 (2017)

MPG.PuRe

Journal Article

Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation. Scientific Data 4, 170013 (2017)

MPG.PuRe

Journal Article

Schiessl, S.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R.: Post-polyploidisation morphotype diversification associates with gene copy number variation. Scientific Reports 7, 41845 (2017)

MPG.PuRe

Journal Article

Schiessl, S. V.; Huettel, B.; Kuehn, D.; Reinhardt, R.; Snowdon, R. J.: Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles. Frontiers in Plant Science 8, 1742 (2017)

MPG.PuRe

2016

Journal Article

Alles, J.; Menegatti, J.; Motsch, N.; Hart, M.; Reinhardt, R.; Eichner, N.; Meister, G.; Grässer, F. A.: miRNA expression profiling of Epstein-Barr virus-associated NKTL cell lines by Illumina deep sequencing. Febs Open Bio 6, pp. 251 - 263 (2016)

MPG.PuRe

Journal Article

Alves, R. N.; Gomes, A. S.; Stueber, K.; Tine, M.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: The transcriptome of metamorphosing flatfish. BMC Genomics 17, 413 (2016)

MPG.PuRe

Journal Article

Blättner, S.; Das, S.; Paprotka, K.; Eilers, U.; Krischke, M.; Kretschmer, D.; Remmele, C.W.; Dittrich, M.; Müller, T.; Schuelein-Voelk, C. et al.; Hertlein, T.; Huettel, B.; Reinhardt, R.; Ohlsen, K.; Rudel, T.; Fraunholz, M.J.: Staphylococcus aureus Exploits a Non-ribosomal Cyclic Dipeptide to Modulate Survival within Epithelial Cells and Phagocytes. PLoS Pathogens 12, e1005857 (2016)

MPG.PuRe

Journal Article

Cartolano, M.; Huettel, B.; Hartwig, B.; Reinhardt, R.; Schneeberger, K.: cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing. PLoS One 11 (6), e0157779 (2016)

MPG.PuRe

Journal Article

Das, S.; Lindemann, C.; Young, B.C.; Muller, J.; Österreich, B.; Ternette, N.; Winkler, A.-C.; Paprotka, K.; Reinhardt, R.; Förstner, K.U. et al.; Allen, E.; Flaxman, A.; Yamaguchi, Y.; Rollier, C.S.; Diemen, P.V.; Blättner, S.; Remmele, C.W.; Selle, M.; Dittrich, M.; Müller, T.; Vogel, J.; Ohlsen, K.; Crook, D.W.; Massey, R.; Wilson, D.J.; Rudel, T.; Wyllie, D.H.; Fraunholz, M.J.: Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation. Proceedings of the National Academy of Sciences of the United States of America 113 (22), pp. E3101 - E3110 (2016)

MPG.PuRe

Journal Article

Dörries, M.; Wöhlbrand, L.; Kube, M.; Reinhardt, R.; Rabus, R.: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059. BMC Genomics 19, 918 (2016)

MPG.PuRe

Journal Article

Dugar, G.; Svensson, S. L.; Bischler, T.; Waeldchen, S.; Reinhardt, R.; Sauer, M.; Sharma, C. M.: The CsrA-FliW network controls polar localization of the dual-function flagellin mRNA in Campylobacter jejuni. Nature Communications 7, 11667 (2016)

MPG.PuRe

Journal Article

Forat, S.; Huettel, B.; Reinhardt, R.; Fimmers, R.; Haidl, G.; Denschlag, D.; Olek, K.: Methylation Markers for the Identification of Body Fluids and Tissues from Forensic Trace Evidence. PLoS One 11 (2), e0147973 (2016)

MPG.PuRe

Journal Article

Hoenicka, H.; Lehnhardt, D.; Nunna, S.; Reinhardt, R.; Jeltsch, A.; Briones, V.; Fladung, M.: Level of tissue differentiation influences the activation of a heat-inducible flower-specific system for genetic containment in poplar (Populus tremula L.). Plant Cell Reports 35, pp. 369 - 384 (2016)

MPG.PuRe

Journal Article

Holmqvist, E.; Wright, P. R.; Li, L.; Bischler, T.; Barquist, L.; Reinhardt, R.; Backofen, R.; Vogel, J.: Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo. EMBO Journal 35 (9), pp. 991 - 1011 (2016)

MPG.PuRe

Journal Article

Jakobi, T.; Czaja-Hasse, L.; Reinhardt, R.; Dieterich, C.: Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts. Genomics, Proteomics & Bioinformatics 14, pp. 216 - 223 (2016)

MPG.PuRe

Journal Article

Kungulovski, G.; Mauser, R.; Reinhardt, R.; Jeltsch, A.: Application of recombinant TAF3 PHD domain instead of anti-H3K4me3 antibody. Epigenetics & Chromatin 9, 11 (2016)

MPG.PuRe

Journal Article

Louro, B.; Kuhl, H.; Tine, M.; de Koning, D.-J.; Batargias, C.; Volckaert, F. A. M.; Reinhardt, R.; Canario, A.V.M.; Power, D.M.: Characterization and refinement of growth related quantitative trait loci in European sea bass (Dicentrarchus labrax) using a comparative approach. Aquaculture 455, pp. 8 - 21 (2016)

MPG.PuRe

Journal Article

Smirnov, A.; Foerstner, K. U.; Holmqvist, E.; Otto, A.; Guenster, R.; Becher, D.; Reinhardt, R.; Vogel, J.: Grad-seq guides the discovery of ProQ as a major small RNA-binding protein. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 113 (41), pp. 11591 - 11596 (2016)

MPG.PuRe

Journal Article

Wasmund, K.; Cooper, M.; Schreiber, L.; Lloyd, K.G.; Baker, B.J.; Petersen, D.G.; Jørgensen, B.B.; Stepanauskas, R.; Reinhardt, R.; Schramm, A. et al.; Loy, A.; Adrian, L.: Single-Cell Genome and Group-Specific dsrAB Sequencing Implicate Marine Members of the Class Dehalococcoidia (Phylum Chloroflexi) in Sulfur Cycling. mBio, e00266-16 (2016)

MPG.PuRe

Journal Article

Westermann, A. J.; Foerstner, K. U.; Amman, F.; Barquist, L.; Chao, Y.; Schulte, L. N.; Mueller, L.; Reinhardt, R.; Stadler, P. F.; Vogel, J.: Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions. Nature 529 (7587), pp. 496 - + (2016)

MPG.PuRe

2015

Journal Article

Frey, F. P.; Urbany, C.; Huettel, B.; Reinhardt, R.; Stich, B.: Genome-wide expression profiling and phenotypic evaluation of European maize inbreds at seedling stage in response to heat stress. BMC Genomics 16, 123 (2015)

MPG.PuRe

2014

Journal Article

Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Single Nucleotide PolymorPhisms in IKZF1, ARID5B and CEBPE are a Risk Factor for the Development of Adult ALL. CLINICAL LYMPHOMA MYELOMA & LEUKEMIA 14, p. S114 - S114 (2014)

MPG.PuRe

Journal Article

Burmeister, T.; Bartels, G.; Groeger, D.; Trautmann, H.; Schwartz, S.; Lenz, K.; Tietze-Buerger, C.; Viardot, A.; Waesch, R.; Horst, H.-A. et al.; Reinhardt, R.; Goekbuget, N.; Hoelzer, D.; Kneba, M.; Brueggemann, M.: Germline variants in IKZF1, ARID5B, and CEBPE as risk factors for adult- onset acute lymphoblastic leukemia: an analysis from the GMALL study group. HAEMATOLOGICA 99 (2), pp. E23 - E25 (2014)

MPG.PuRe

Journal Article

Dohm, J. C.; Minoche, A. E.; Holtgraewe, D.; Capella-Gutierrez, S.; Zakrzewski, F.; Tafer, H.; Rupp, O.; Rossleff Soerensen, T.; Stracke, R.; Reinhardt, R. et al.; Goesmann, A.; Kraft, T.; Schulz, B.; Stadler, P. F.; Schmidt, T.; Gabaldon, T.; Lehrach, H.; Weisshaar, B.; Himmelbauer, H.: The genome of the recently domesticated crop plant sugar beet (Beta vulgaris). NATURE 505 (7484), pp. 546 - + (2014)

MPG.PuRe

Journal Article

Emperle, M.; Rajavelu, A.; Reinhardt, R.; Jurkowska, R. Z.; Jeltsch, A.: Cooperative DNA Binding and Protein/DNA Fiber Formation Increases the Activity of the Dnmt3a DNA Methyltransferase. The Journal of Biological Chemistry 289 (43), pp. 29602 - 29613 (2014)

MPG.PuRe

Journal Article

Gomes, A. S.; Alves, R. N.; Stueber, K.; Thorne, M. A. S.; Smaradottir, H.; Reinhardt, R.; Clark, M. S.; Ronnestad, I.; Power, D. M.: Transcriptome of the Atlantic halibut (Hippoglossus hippoglossus). MARINE GENOMICS 18, pp. 101 - 103 (2014)

MPG.PuRe

Journal Article

Kopf, M.; Klähn, S.; Voss, B.; Stüber, K.; Huettel, B.; Reinhardt, R.; Hess, W. R.: Finished Genome Sequence of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC 6714. Genome Announcements 2 (4), e00757-14 (2014)

MPG.PuRe

ZIP

Journal Article

Kube, M.; Siewert, C.; Migdoll, A. M.; Duduk, B.; Holz, S.; Rabus, R.; Seemueller, E.; Mitrovic, J.; Mueller, I.; Buettner, C. et al.; Reinhardt, R.: Analysis of the Complete Genomes of Acholeplasma brassicae, A. palmae and A. laidlawii and Their Comparison to the Obligate Parasites from 'Candidatus Phytoplasma'. Journal of Molecular Microbiology and Biotechnology 24 (1), pp. 19 - 36 (2014)

MPG.PuRe

Journal Article

Kungulovski, G.; Kycia, I.; Tamas, R.; Jurkowska, R. Z.; Kudithipudi, S.; Henry, C.; Reinhardt, R.; Labhart, P.; Jeltsch, A.: Application of histone modification-specific interaction domains as an alternative to antibodies. Genome Research 24 (11), pp. 1842 - 1853 (2014)

MPG.PuRe

Journal Article

Loehrer, M.; Vogel, A.; Huettel, B.; Reinhardt, R.; Benes, V.; Duplessis, S.; Usadel, B.; Schaffrath, U.: On the current status of Phakopsora pachyrhizi genome sequencing. Frontiers in Plant Science 5, 377 (2014)

MPG.PuRe

Journal Article

Meharg, C.; Khan, B.; Norton, G.; Deacon, C.; Johnson, D.; Reinhardt, R.; Huettel, B.; Meharg, A. A.: Trait-directed de novo population transcriptome dissects genetic regulation of a balanced polymorphism in phosphorus nutrition/arsenate tolerance in a wild grass, Holcus lanatus. New Phytologist 201, pp. 144 - 1554 (2014)

MPG.PuRe

Journal Article

Nunna, S.; Reinhardt, R.; Ragozin, S.; Jeltsch, A.: Targeted Methylation of the Epithelial Cell Adhesion Molecule (EpCAM) Promoter to Silence Its Expression in Ovarian Cancer Cells. PLoS One 9 (1), e87703 (2014)

MPG.PuRe

Journal Article

Petasch, J.; Disch, E.-M.; Markert, S.; Becher, D.; Schweder, T.; Huettel, B.; Reinhardt, R.; Harder, J.: The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen. BMC Microbiology 14, 164 (2014)

MPG.PuRe

Journal Article

Remmele, C. W.; Xian, Y.; Albrecht, M.; Faulstich, M.; Fraunholz, M.; Heinrichs, E.; Dittrich, M. T.; Müller, T.; Reinhardt, R.; Rudel, T.: Transcriptional landscape and essential genes of Neisseria gonorrhoeae. Nucleic Acids Research 42 (16), pp. 10579 - 10595 (2014)

MPG.PuRe

ZIP

Journal Article

Shanmugam, R.; Aklujkar, M.; Schaefer, M.; Reinhardt, R.; Nickel, O.; Reuter, G.; Lovley, D. R.; Ehrenhofer-Murray, A.; Nelle, W.; Ankri, S. et al.; Helm, M.; Jurkowski, T. P.; Jeltsch, A.: The Dnmt2 RNA methyltransferase homolog of Geobacter sulfurreducens specifically methylates tRNA-Glu. Nucleic Acids Research (London) 42 (10), pp. 6487 - 6496 (2014)

MPG.PuRe

Journal Article

Siewert, C.; Hess, W. R.; Duduk, B.; Huettel, B.; Reinhardt, R.; Buettner, C.; Kube, M.: Complete genome determination and analysis of Acholeplasma oculi strain 19L, highlighting the loss of basic genetic features in the Acholeplasmataceae. BMC Genomics 15, 931 (2014)

MPG.PuRe

Journal Article

Strijkstra, A.; Trautwein, K.; Jarling, R.; Woehlbrand, L.; Doerries, M.; Reinhardt, R.; Drozdowska, M.; Golding, B. T.; Wilkes, H.; Rabus, R.: Anaerobic Activation of p-Cymene in Denitrifying Betaproteobacteria: Methyl Group Hydroxylation versus Addition to Fumarate. Applied and Environmental Microbiology 80 (24), pp. 7592 - 7603 (2014)

MPG.PuRe

Journal Article

Tine, M.; Kuhl, H.; Gagnaire, P.-A.; Louro, B.; Desmarais, E.; Martins, R. S. T.; Hecht, J.; Knaust, F.; Belkhir, K.; Klages, S. et al.; Dieterich, R.; Stueber, K.; Piferrer, F.; Guinand, B.; Bierne, N.; Volckaert, F. A. M.; Bargelloni, L.; Power, D. M.; Bonhomme, F.; Canario, A. V. M.; Reinhardt, R.: \European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation. Nature Communications 5, 5770 (2014)

MPG.PuRe

Journal Article

Wasmund, K.; Algora, C.; Müller, J.; Krüger, M.; Lloyd, K.G.; Reinhardt, R.; Adrian, L.: Development and application of primers for the class Dehalococcoidia (phylum Chloroflexi) enables deep insights into diversity and stratification of subgroups in the marine subsurface. Environmental Microbiology, 10.1111/1462-2920.12510 (2014)

MPG.PuRe

2013

Journal Article

Acevedo Garcia, J.; Collins, N. C.; Ahmadinejad, N.; Ma, L.; Houben, A.; Bednarek, P.; Benjdia, M.; Freialdenhoven, A.; Altmueller, J.; Nuernberg, P. et al.; Reinhardt, R.; Schulze-Lefert, P.; Panstruga, R.: Fine mapping and chromosome walking towards the Ror1 locus in barley (Hordeum vulgare L.). Theoretical and Applied Genetics 126 (12), pp. 2969 - 2982 (2013)

MPG.PuRe

Journal Article

Dugar, G.; Herbig, A.; Förstner, K. U.; Heidrich, N.; Reinhardt, R.; Nieselt, K.; Sharma, C.: High-Resolution Transcriptome Maps Reveal Strain-Specific Regulatory Features of Multiple Campylobacter jejuni Isolates. PLoS Genetics 9 (5), e1003495 (2013)

MPG.PuRe