Publications of A. Tresch

Failmezger, H.; Lempe, J.; Khadem, N.; Cartolano, M.; Tsiantis, M.; Tresch, A.: MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14, 27 (2018)

Kiefer, C.; Severing, E.; Karl, R.; Bergonzi, S.; Koch, M.; Tresch, A.; Coupland, G.: Divergence of annual and perennial species in the Brassicaceae and the contribution of cis-acting variation at FLC orthologues. Molecular Ecology 26, pp. 3437 - 3457 (2017)

Beil-Wagner, J.; Doessinger, G.; Schober, K.; vom Berg, J.; Tresch, A.; Grandl, M.; Palle, P.; Mair, F.; Gerhard, M.; Becher, B. et al.; Busch, D. H.; Buch, T.: T cell-specific inactivation of mouse CD2 by CRISPR/Cas9. Scientific Reports 6, 21377 (2016)

Dursun, E.; Endele, M.; Musumeci, A.; Failmezger, H.; Wang, S.-H.; Tresch, A.; Schroeder, T.; Krug, A. B.: Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. Scientific Reports 6, 37462 (2016)

Glas, J.; Duemcke, S.; Zacher, B.; Poron, D.; Gagneur, J.; Tresch, A.: Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. Nucleic Acids Research (London), 10.1093/nar/gkv1184 (2016)

Rey, J. W.; Deris, N.; Marquardt, J. U.; Thomaidis, T.; Moehler, M.; Kittner, J. M.; Nguyen-Tat, M.; Duemcke, S.; Tresch, A.; Biesterfeld, S. et al.; Goetz, M.; Mudter, J.; Neurath, M. F.; Galle, P. R.; Kiesslich, R.; Hoffman, A.: High-definition endoscopy with iScan and Lugol's solution for the detection of inflammation in patients with nonerosive reflux disease: histologic evaluation in comparison with a control group. DISEASES OF THE ESOPHAGUS 29 (2), pp. 185 - 191 (2016)

Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)

Hofmann, A.; Ritz, U.; Rompe, J. -.; Tresch, A.; Rommens, P. M.: The effect of shock wave therapy on gene expression in human osteoblasts isolated from hypertrophic fracture non-unions. SHOCK WAVES 25 (1), pp. 91 - 102 (2015)

Niederberger, T.; Failmezger, H.; Uskat, D.; Poron, D.; Glauche, I.; Scherf, N.; Roeder, I.; Schroeder, T.; Tresch, A.: Factor graph analysis of live cell-imaging data reveals mechanisms of cell fate decisions. Bioinformatics (Oxford, England) 31 (11), pp. 1816 - 23 (2015)

Akman, K.; Haaf, T.; Gravina, S.; Vijg, J.; Tresch, A.: Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data. Bioinformatics 30 (13), pp. 1933 - 1934 (2014)

Duemcke, S.; Braeuer, J.; Anchang, B.; Spang, R.; Beerenwinkel, N.; Tresch, A.: Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction. Bioinformatics 30 (3), pp. 414 - 419 (2014)

Duemcke, S.; Mansmann, U.; Tresch, A.: A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours. PLoS One 9 (10), e107955 (2014)

Prazeres da Costa, O.; Hoffman, A.; Rey, J. W.; Mansmann, U.; Buch, T.; Tresch, A.: Selection of Higher Order Regression Models in the Analysis of Multi-Factorial Transcription Data. PLOS ONE 9 (3), e91840 (2014)

Steffens, A.; Jaegle, B.; Tresch, A.; Huelskamp, M.; Jakoby, M.: Processing-Body Movement in Arabidopsis Depends on an Interaction between Myosins and DECAPPING PROTEIN1([W]). Plant Physiology 164 (4), pp. 1879 - 1892 (2014)

Zacher, B.; Lidschreiber, M.; Cramer, P.; Gagneur, J.; Tresch, A.: Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. MOLECULAR SYSTEMS BIOLOGY 10 (12), 768 (2014)

Failmezger, H.; Froehlich, H.; Tresch, A.: Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. BMC Bioinformatics 14, 292 (2013)

Failmezger, H.; Jaegle, B.; Schrader, A.; Huelskamp, M.; Tresch, A.: Semi-automated 3D Leaf Reconstruction and Analysis of Trichome Patterning from Light Microscopic Images. PLoS Computational Biology 9 (4), e1003029 (2013)

Failmezger, H.; Praveen, P.; Tresch, A.; Froehlich, H.: Learning gene network structure from time laps cell imaging in RNAi Knock downs. BIOINFORMATICS 29 (12), pp. 1534 - 1540 (2013)

Norousi, R.; Wickles, S.; Leidig, C.; Becker, T.; Schmid, V. J.; Beckmann, R.; Tresch, A.: Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs. Journal of Structural Biology 182 (2), pp. 59 - 66 (2013)

Sun, M.; Schwalb, B.; Pirkl, N.; Maier, K. C.; Schenk, A.; Failmezger, H.; Tresch, A.; Cramer, P.: Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels. Molecular Cell 52 (1), pp. 52 - 62 (2013)

Duemcke, S.; Seizl, M.; Etzold, S.; Pirkl, N.; Martin, D.; Cramer, P.; Tresch, A.: One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data. Nucleic Acids Research (London) 40 (18), pp. 8883 - 8892 (2012)

Niederberger, T.; Etzold, S.; Lidschreiber, M.; Maier, K. C.; Martin, D. E.; Froehlich, H.; Cramer, P.; Tresch, A.: MC EMiNEM Maps the Interaction Landscape of the Mediator. PLoS Computational Biology 8 (6), e1002568 (2012)