Computational Tools

Here we report the sequencing, assembly and annotation of the genomes of Cardamine hirsuta and also the transcriptome. Comparative studies between Cardamine hirsuta and A. thaliana can greatly enrich our knowledge of the molecular mechanisms driving evolution of form.

MorphoGraphX is an open source application for the visualization and analysis of 4D biological datasets. Developed by researchers, it is primarily used for the analysis and quantification of 4D live-imaged confocal data.

IMR/DENOM is an Illumina short-read analysis software. It employed iterative read mapping and de novo assembly for reliable variant calling.