Max Planck Institute for Plant Breeding Research

Publications of M. Tsiantis

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Journal Article (55)

2024

Journal Article

Fuster-Pons, A.; Murillo-Sanchez, A.; Mendez-Vigo, B.; Marcer, A.; Pieper, B.; Torres-Perez, R.; Oliveros, J. C.; Tsiantis, M.; Pico, F. X.; Alonso-Blanco, C.: The trichome pattern diversity of Cardamine shares genetic mechanisms with Arabidopsis but differs in environmental drivers. Plant Physiology, kiae213 (2024)

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Hu, Z.; Wilson Sánchez, D.; Bhatia, N.; Rast, M. I.; Wu, A.; Vlad, D.; McGuire, L.; Nikolov, L. A.; Laufs, P.; Gan, X. et al.; Laurent, S.; Runions, A.; Tsiantis, M.: A CUC1/auxin genetic module links cell polarity to patterned tissue growth and leaf shape diversity in crucifer plants. PNAS 121 (26), e2321877121 (2024)

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Li, X.-M.; Jenke, H.; Strauss, S.; Bazakos, C.; Mosca, G.; Lymbouridou, R.; Kierzkowski, D.; Neumann, U.; Naik, P.; Huijser, P. et al.; Laurent, S.; Smith, R. S.; Runions, A.; Tsiantis, M.: Cell-cycle-linked growth reprogramming encodes developmental time into leaf morphogenesis. Current Biology 34, pp. 541 - 556.e515 (2024)

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Li, X.-M.; Jenke, H.; Strauß, S.; Wang, Y.; Bhatia, N.; Kierzkowski, D.; Lymbouridou, R.; Huijser, P.; Smith, R. S.; Runions, A. et al.; Tsiantis, M.: Age-associated growth control modifies leaf proximodistal symmetry and enabled leaf shape diversification. Current Biology 34 (19), pp. 4547 - 4558.e9 (2024)

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Vijayan, A.; Mody, T. A.; Yu, Q.; Wolny, A.; Cerrone, L.; Strauss, S.; Tsiantis, M.; Smith, R. S.; Hamprecht, F. A.; Kreshuk, A. et al.; Schneitz, K.: A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context. Development 151 (14), dev202800 (2024)

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2023

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Baumgarten, L.; Pieper, B.; Song, B.; Mane, S.; Lempe, J.; Lamb, J.; Cooke, E. L.; Srivastava, R.; Struett, S.; Zanko, D. et al.; Casimiro, P. G. P.; Hallab, A.; Cartolano, M.; Tattersall, A. D.; Huettel, B.; Filatov, D. A.; Pavlidis, P.; Neuffer, B.; Bazakos, C.; Schaefer, H.; Mott, R.; Gan, X.; Alonso-Blanco, C.; Laurent, S.; Tsiantis, M.: Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns. PLoS Biology 21 (7), e3002191 (2023)

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Bhatia, N.; Wilson-Sanchez, D.; Strauss, S.; Vuolo, F.; Pieper, B.; Hu, Z.; Rambaud-Lavigne, L.; Tsiantis, M.: Interspersed expression of CUP-SHAPED COTYLEDON2 and REDUCED COMPLEXITY shapes Cardamine hirsuta complex leaf form. Current Biology (2023)

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Srivastava, R.; Bazakos, C.; Tsachaki, M.; Zanko, D.; Kalantidis, K.; Tsiantis, M.; Laurent, S.: Genealogical Analyses of 3 Cultivated and 1 Wild Specimen of Vitis vinifera from Greece. Genome Biology and Evolution 15 (12), evad226 (2023)

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2022

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Liu, S.; Strauss, S.; Adibi, M.; Mosca, G.; Yoshida, S.; Dello Ioio, R.; Runions, A.; Andersen, T. G.; Grossmann, G.; Huijser, P. et al.; Smith, R. S.; Tsiantis, M.: Cytokinin promotes growth cessation in the Arabidopsis root. Current Biology 32 (9), pp. 1974 - 1985 (2022)

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Strauß, S.; Runions, A.; Lane, B.; Eschweiler, D.; Bajpai, N.; Trozzi, N.; Routier-Kierzkowska, A.-L.; Yoshida, S.; Rodrigues da Silveira, S.; Vijayan, A. et al.; Tofanelli, R.; Majda, M.; Echevin, E.; Le Gloanec, C.; Bertrand-Rakusova, H.; Adibi, M.; Schneitz, K.; Bassel, G. W.; Kierzkowski, D.; Stegmaier, J.; Tsiantis, M.; Smith, R. S.: Using positional information to provide context for biological image analysis with MorphoGraphX 2.0. ELIFE 11, e72601 (2022)

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Vijayan, A.; Strauß, S.; Tofanelli, R.; Mody, T. A.; Lee, K.; Tsiantis, M.; Smith, R. S.; Schneitz, K.: The annotation and analysis of complex 3D plant organs using 3DCoordX. Plant Physiology 189 (3), pp. 1278 - 1295 (2022)

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Wang, Y.; Strauß, S.; Liu, S.; Pieper, B.; Lymbouridou, R.; Runions, A.; Tsiantis, M.: The cellular basis for synergy between RCO and KNOX1 homeobox genes in leaf shape diversity. Current Biology 32 (17), pp. 3773 - 3784.e5 (2022)

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Wilson Sánchez, D.; Bhatia, N.; Runions, A.; Tsiantis, M.: From genes to shape in leaf development and evolution. Current Biology 32 (21), pp. R1215 - R1222 (2022)

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2021

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Bhatia, N.; Runions, A.; Tsiantis, M.: Leaf Shape Diversity: From Genetic Modules to Computational Models. Annual Review of Plant Biology 72, pp. 325 - 356 (2021)

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Paulisic, S.; Qin, W.; Veraszto, H. A.; Then, C.; Alary, B.; Nogue, F.; Tsiantis, M.; Hothorn, M.; Martinez-Garcia, J. F.: Adjustment of the PIF7-HFR1 transcriptional module activity controls plant shade adaptation. EMBO Journal 40, e104273 (2021)

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Winkelmueller, T. M.; Entila, F.; Anver, S.; Piasecka, A.; Song, B.; Dahms, E.; Sakakibara, H.; Gan, X.; Kułak, K.; Sawikowska, A. et al.; Krajewski, P.; Garrido-Oter, R.; Tsiantis, M.; Fukushima, K.; Schulze-Lefert, P.; Laurent, S.; Bednarek, P.; Tsuda, K.: Gene expression evolution in pattern-triggered immunity within Arabidopsis thaliana and across Brassicaceae species. The Plant Cell, koab073 (2021)

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2020

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Akiyama, R.; Sun, J.; Hatakeyama, M.; Lischer, H. E. L.; Briskine, R. V.; Hay, A.; Gan, X.; Tsiantis, M.; Kudoh, H.; Kanaoka, M. et al.; Sese, J.; Shimizu, K. K.; Shimizu-Inatsugi, R.: Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species. New Phytologist 229, pp. 3587 - 3601 (2020)

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Kamei, C. L. A.; Pieper, B.; Laurent, S.; Tsiantis, M.; Huijser, P.: CRISPR/Cas9-Mediated Mutagenesis of RCO in Cardamine hirsuta. PLANTS-BASEL 9 (2), 268 (2020)

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Romani, F.; Banic, E.; Florent, S. N.; Kanazawa, T.; Goodger, J. Q. D.; Mentink, R. A.; Dierschke, T.; Zachgo, S.; Ueda, T.; Bowman, J. L. et al.; Tsiantis, M.; Moreno, J. E.: Oil Body Formation in Marchantia polymorpha Is Controlled by MpC1HDZ and Serves as a Defense against Arthropod Herbivores. Current Biology 30 (14), pp. 2815 - 2828.e (2020)

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Strauss, S.; Lempe, J.; Prusinkiewicz, P.; Tsiantis, M.; Smith, R. S.: Phyllotaxis: is the golden angle optimal for light capture? New Phytologist 225 (1), pp. 499 - 510 (2020)

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Wolny, A.; Cerrone, L.; Vijayan, A.; Tofanelli, R.; Barro, A. V.; Louveaux, M.; Wenzl, C.; Strauß, S.; Wilson Sánchez, D.; Lymbouridou, R. et al.; Steigleder, S. S.; Pape, C.; Bailoni, A.; Duran-Nebreda, S.; Bassel, G. W.; Lohmann, J. U.; Tsiantis, M.; Hamprecht, F. A.; Schneitz, K.; Maizel, A.; Kreshuk, A.: Accurate and versatile 3D segmentation of plant tissues at cellular resolution. eLife 9, e57613 (2020)

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Zhang, Z.; Runions, A.; Mentink, R. A.; Kierzkowski, D.; Karady, M.; Hashemi, B.; Huijser, P.; Strauß, S.; Gan, X.; Ljung, K. et al.; Tsiantis, M.: A WOX/Auxin Biosynthesis Module Controls Growth to Shape Leaf Form. Current Biology 30, pp. 4857 - 4868.e6 (2020)

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2019

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Busch, A.; Deckena, M.; Almeida-Trapp, M.; Kopischke, S.; Kock, C.; Schuessler, E.; Tsiantis, M.; Mithoefer, A.; Zachgo, S.: MpTCP1 controls cell proliferation and redox processes in Marchantia polymorpha. New Phytologist 224 (4), pp. 1627 - 1641 (2019)

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Hajheidari, M.; Wang, Y.; Bhatia, N.; Vuolo, F.; Franco-Zorrilla, J. M.; Karady, M.; Mentink, R. A.; Wu, A.; Rilwan Oluwatobi, B. R.; Müller, B. et al.; Dello Ioio, R.; Laurent, S.; Ljung, K.; Huijser, P.; Gan, X.; Tsiantis, M.: Autoregulation of RCO by low-affinity binding modulates cytokinin action and shapes leaf diversity. Current Biology (2019)

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Kierzkowski, D.; Runions, A.; Vuolo, F.; Strauß, S.; Lymbouridou, R.; Routier-Kierzkowska, A.-L.; Wilson Sánchez, D.; Jenke, H.; Galinha, C.; Mosca, G. et al.; Zhang, Z.; Canales, C.; Dello Ioio, R.; Huijser, P.; Smith, R. S.; Tsiantis, M.: A Growth-Based Framework for Leaf Shape Development and Diversity. Cell (2019)

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Molina-Contreras, M. J.; Paulisic, S.; Then, C.; Moreno-Romero, J.; Pastor-Andreu, P.; Morelli, L.; Roig-Villanova, I.; Jenkins, H.; Hallab, A.; Gan, X. et al.; Gomez-Cadenas, A.; Tsiantis, M.; Rodriguez-Concepcion, M.; Martinez-Garcia, J. F.: Photoreceptor Activity Contributes to Contrasting Responses to Shade in Cardamine and Arabidopsis Seedlings. The Plant Cell 31 (11), pp. 2649 - 2663 (2019)

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Nikolov, L. A.; Shushkov, P.; Nevado, B.; Gan, X.; Al-Shehbaz, I. A.; Filatov, D.; Bailey, C. D.; Tsiantis, M.: Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity. New Phytologist 222, pp. 1638 - 1651 (2019)

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2018

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Das Gupta, M.; Tsiantis, M.: Gene networks and the evolution of plant morphology. Current Opinion in Plant Biology 45, pp. 82 - 87 (2018)

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Di Ruocco, G.; Bertolotti, G.; Pacifici, E.; Polverari, L.; Tsiantis, M.; Sabatini, S.; Costantino, P.; Dello Ioio, R.: Differential spatial distribution of miR165/6 determines variability in plant root anatomy. Development 145 (1), UNSP dev153858 (2018)

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Failmezger, H.; Lempe, J.; Khadem, N.; Cartolano, M.; Tsiantis, M.; Tresch, A.: MowJoe: a method for automated-high throughput dissected leaf phenotyping. Plant Methods 14, 27 (2018)

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Rasmann, S.; Vilas, J. S.; Glauser, G.; Cartolano, M.; Lempe, J.; Tsiantis, M.; Pannell, J. R.: Pleiotropic effect of the Flowering Locus C on plant resistance and defence against insect herbivores. Journal of Ecology 106 (3), pp. 1244 - 1255 (2018)

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Sapala, A.; Runions, A.; Routier-Kierzkowska, A.-L.; Das Gupta, M.; Hong, L.; Hofhuis, H.; Verger, S.; Mosca, G.; Li, C.-B.; Hay, A. et al.; Hamant, O.; Roeder, A.H.K.; Tsiantis, M.; Prusinkiewicz, R.; Smith, R. S.: Why plants make puzzle cells, and how their shape emerges. eLife 7, e32794 (2018)

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Vuolo, F.; Kierzkowski, D.; Runions, A.; Hajheidari, M.; Mentink, R. A.; Das Gupta, M.; Zhang, Z.; Vlad, D.; Wang, Y.; Pecinka, A. et al.; Gan, X.; Hay, A.; Huijser, P.; Tsiantis, M.: LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes and Development 32, pp. 1361 - 1366 (2018)

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2017

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Imprialou, M.; Kahles, A.; Steffen, J. G.; Osborne, E. J.; Gan, X.; Lempe, J.; Bhomra, A.; Belfield, E.; Visscher, A.; Greenhalgh, R. et al.; Harberd, N. P.; Goram, R.; Hein, J.; Robert-Seilaniantz, A.; Jones, J.; Stegle, O.; Kover, P.; Tsiantis, M.; Nordborg, M.; Rätsch , G.; Clark, R. M.; Mott, R.: Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits. Genetics 205 (4), pp. 1425 - 1441 (2017)

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McKim, S. M.; Routier-Kierzkowska, A.-L.; Monniaux, M.; Kierzkowski, D.; Pieper, B.; Smith, R. S.; Tsiantis, M.; Hay, A.: Seasonal Regulation of Petal Number. Plant Physiology 175 (2), pp. 886 - 903 (2017)

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Monniaux, M.; McKim, S. M.; Cartolano, M.; Thévenon, E.; Parcy, F.; Tsiantis, M.; Hay, A.: Conservation vs divergence in LEAFY and APETALA1 functions between Arabidopsis thaliana and Cardamine hirsuta. New Phytologist 216, pp. 549 - 561 (2017)

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Nikolov, L. A.; Tsiantis, M.: Using mustard genomes to explore the genetic basis of evolutionary change. Current Opinion in Plant Biology 36, pp. 119 - 128 (2017)

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Rebeiz, M.; Tsiantis, M.: Enhancer evolution and the origins of morphological novelty. Current Opinion in Genetics & Development 45, pp. 115 - 123 (2017)

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Runions, A.; Tsiantis, M.: The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany 104 (10), pp. 1437 - 1441 (2017)

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Runions, A.; Tsiantis, M.; Prusinkiewicz, P.: A common developmental program can produce diverse leaf shapes. New Phytologist 216 (2), pp. 401 - 418 (2017)

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2016

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Gan, X.; Hay, A.; Kwantes, M.; Haberer, G.; Hallab, A.; Dello Ioio, R.; Hofhuis, H.; Pieper, B.; Cartolano, M.; Neumann, U. et al.; Nikolov, L. A.; Song, B.; Hajheidari, M.; Briskine, R.; Kougioumoutzi, E.; Vlad, D.; Broholm, S.; Hein, J.; Meksem, K.; Lightfoot, D.; Shimizu, K. K.; Shimizu-Inatsugi, R.; Imprialou, M.; Kudrna, D.; Wing, R.; Sato, S.; Huijser, P.; Filatov, D.; Mayer, K. F. X.; Mott, R.; Tsiantis, M.: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants 2 (10), 16167 (2016)

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Hay, A.; Tsiantis, M.: Cardamine hirsuta: a comparative view. Current Opinion in Genetics & Development 39, pp. 1 - 7 (2016)

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Hofhuis, H.; Moulton, D.; Lessinnes, T.; Routier-Kierzkowska, A.-L.; Bomphrey, R.J.; Mosca, G.; Reinhardt, H.; Sarchet, P.; Gan, X.; Tsiantis, M. et al.; Ventikos, Y.; Walker, S.; Goriely, A.; Smith, R. S.; Hay, A.: Morphomechanical Innovation Drives Explosive Seed Dispersal. Cell 166 (1), pp. 222 - 33 (2016)

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Matsuhashi, S.; Kudoh, H.; Maki, M.; Cartolano, M.; Tsiantis, M.; Itagaki, T.; Sakai, S.: Invasion history of Cardamine hirsuta in Japan inferred from genetic analyses of herbarium specimens and current populations. BIOLOGICAL INVASIONS 18 (7), pp. 1939 - 1951 (2016)

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Vuolo, F.; Mentink, R. A.; Hajheidari, M.; Bailey, C. D.; Filatov, D. A.; Tsiantis, M.: Coupled enhancer and coding sequence evolution of a homeobox gene shaped leaf diversity. Genes and Development 30, pp. 2370 - 2375 (2016)

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2015

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Barbier de Reuille, P.; Routier-Kierzkowska, A.-L.; Kierzkowski, D.; Bassel, G. W.; Schuepbach, T.; Tauriello, G.; Bajpai, N.; Strauss, S.; Weber, A.; Kiss, A. et al.; Burian, A.; Hofhuis, H.; Sapala, A.; Lipowczan, M.; Heimlicher, M. B.; Robinson, S.; Bayer, E. M.; Basler, K.; Koumoutsakos, P.; Roeder, A. H. K.; Aegerter-Wilmsen, T.; Nakayama, N.; Tsiantis, M.; Hay, A.; Kwiatkowska, D.; Xenarios, I.; Kuhlemeier, C.; Smith, R. S.: MorphoGraphX: A platform for quantifying morphogenesis in 4D. ELIFE 4, e05864 (2015)

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Cartolano, M.; Pieper, B.; Lempe, J.; Tattersall, A.; Huijser, P.; Tresch, A.; Darrah, P. R.; Hay, A.; Tsiantis, M.: Heterochrony underpins natural variation in Cardamine hirsuta leaf form. Proceedings of the National Academy of Sciences of the United States of America 112 (33), pp. 10539 - 10544 (2015)

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Mentink, R.; Tsiantis, M.: From limbs to leaves: common themes in evolutionary diversification of organ form. Frontiers in genetics 6, p. 284 - 284 (2015)

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Nikolov, L. A.; Tsiantis, M.: Interspecies Gene Transfer as a Method for Understanding the Genetic Basis for Evolutionary Change: Progress, Pitfalls, and Prospects. Frontiers in Plant Science 6, 1135 (2015)

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Rast-Somssich, M.; Broholm, S.; Jenkins, H.; Canales, C.; Vlad, D.; Kwantes, M.; Bilsborough, G.; Dello Ioio, R.; Ewing, R. M.; Laufs, P. et al.; Huijser, P.; Ohno, C.; Heisler, M. G.; Hay, A.; Tsiantis, M.: Alternate wiring of a KNOXI genetic network underlies differences in leaf development of A. thaliana and C. hirsuta. Genes and Development 29 (23), pp. 2391 - 2404 (2015)

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