Dept. of Plant Developmental Biology

2013

Journal Article

Urbany, C.; Benke, A.; Marsian, J.; Huettel, B.; Reinhardt, R.; Stich, B.: Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17. BMC Plant Biology 13, 213 (2013)

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Vieira, F. A.; Thorne , M. A. S.; Stüber, K.; Darias, M.; Reinhardt, R.; Clark, M. S.; Gisbert, E.; Power, D. M.: Comparative analysis of a teleost skeleton transcriptome provides insight into its regulation. General and Comparative Endocrinology 191, pp. 45 - 58 (2013)

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Journal Article

Zech, H.; Hensler, M.; Kossmehl, S.; Drueppel, K.; Woehlbrand, L.; Trautwein, K.; Colby, T.; Schmidt, J.; Reinhardt, R.; Schmidt-Hohagen, K. et al.; Schomburg, D.; Rabus, R.: Dynamics of amino acid utilization in Phaeobacter inhibens DSM 17395. SI 13 (18-19), pp. 2869 - 2885 (2013)

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Zech, H.; Hensler, M.; Kossmehl, S.; Drueppel, K.; Woehlbrand, L.; Trautwein, K.; Hulsch, R.; Maschmann, U.; Colby, T.; Schmidt, J. et al.; Reinhardt, R.; Schmidt-Hohagen, K.; Schomburg, D.; Rabus, R.: Adaptation of Phaeobacter inhibens DSM 17395 to growth with complex nutrients. SI 13 (18-19), pp. 2851 - 2868 (2013)

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2012

Journal Article

Beutin, L.; Hammerl, J. A.; Strauch, E.; Reetz, J.; Dieckmann, R.; Kelner-Burgos, Y.; Martin, A.; Miko, A.; Strockbine, N. A.; Lindstedt, B. A. et al.; Horn, D.; Monse, H.; Huettel, B.; Mueller, I.; Stueber, K.; Reinhardt, R.: Spread of a Distinct Stx2-Encoding Phage Prototype among Escherichia coli O104:H4 Strains from Outbreaks in Germany, Norway, and Georgia. Journal of Virology 86 (19), pp. 10444 - 10455 (2012)

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Bulgarelli, D.; Rott, M.; Schlaeppi, K.; Ver Loren van Themaat, E.; Ahmadinejad, N.; Assenza, F.; Rauf, P.; Huettel, B.; Reinhardt, R.; Schmelzer, E. et al.; Peplies, J.; Gloeckner, F. O.; Amann, R.; Eickhorst, T.; Schulze-Lefert, P.: Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. NATURE 488 (7409), pp. 91 - 95 (2012)

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Buonocore, F.; Castro, R.; Randelli, E.; Lefranc, M.-P.; Six, A.; Kuhl, H.; Reinhardt, R.; Facchiano, A.; Boudinot, P.; Scapigliati, G.: Diversity, Molecular Characterization and Expression of T Cell Receptor gamma in a Teleost Fish, the Sea Bass (Dicentrarchus labrax, L). PLoS One 7 (10), e47957 (2012)

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Journal Article

Bus, A.; Hecht, J.; Huettel, B.; Reinhardt, R.; Stich, B.: High-throughput polymorphism detection and genotyping in Brassica napus using next-generation RAD sequencing. BMC Genomics 13, 281 (2012)

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External

Journal Article

Chao, Y.; Papenfort, K.; Reinhardt, R.; Sharma, C.M.; Vogel, J.: An atlas of Hfq-bound transcripts reveals 3 ' UTRs as a genomic reservoir of regulatory small RNAs. EMBO Journal 31 (20), pp. 4005 - 4019 (2012)

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Dam, B.; Dam, S.; Kube, M.; Reinhardt, R.; Liesack, W.: Complete Genome Sequence of Methylocystis sp Strain SC2, an Aerobic Methanotroph with High-Affinity Methane Oxidation Potential. Journal of Bacteriology (Washington, DC) 194 (21), pp. 6008 - 6009 (2012)

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Journal Article

Dam, B.; Kube, M.; Dam, S.; Reinhardt, R.; Liesack, W.: Complete Sequence Analysis of Two Methanotroph-Specific repABC-Containing Plasmids from Methylocystis sp Strain SC2. Applied and Environmental Microbiology 78 (12), pp. 4373 - 4379 (2012)

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Journal Article

Diederich, M.; Hansmann, T.; Heinzmann, J.; Barg-Kues, B.; Herrmann, D.; Aldag, P.; Baulain, U.; Reinhardt, R.; Kues, W.; Weissgerber, C. et al.; Haaf, T.; Niemann, H.: DNA methylation and mRNA expression profiles in bovine oocytes derived from prepubertal and adult donors. (2012)

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Geay, F.; Zambonino-Infante, J.; Reinhardt, R.; Kuhl, H.; Santigosa, E.; Cahu, C.; Mazurais, D.: Characteristics of fads2 gene expression and putative promoter in European sea bass (Dicentrarchus labrax): Comparison with salmonid species and analysis of CpG methylation. MARINE GENOMICS 5, pp. 7 - 13 (2012)

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Kleppe, L.; Edvardsen, R. B.; Kuhl, H.; Malde, K.; Furmanek, T.; Drivenes, O.; Reinhardt, R.; Taranger, G. L.; Wargelius, A.: Maternal 3 ' UTRs: from egg to onset of zygotic transcription in Atlantic cod. BMC Genomics 13, 443 (2012)

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Kroenlein, H.; Schwartz, S.; Reinhardt, R.; Rieder, H.; Molkentin, M.; Goekbuget, N.; Hoelzer, D.; Thiel, E.; Burmeister, T.: Molecular analysis of the t(2;8)/MYC-IGK translocation in high-grade lymphoma/leukemia by long-distance inverse PCR. GENES CHROMOSOMES & CANCER 51 (3), pp. 290 - 299 (2012)

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Lahme, S.; Eberlein, C.; Jarling, R.; Kube, M.; Boll, M.; Wilkes, H.; Reinhardt, R.; Rabus, R.: Anaerobic degradation of 4-methylbenzoate via a specific 4-methylbenzoyl-CoA pathway. Environmental Microbiology 14 (5), pp. 1118 - 1132 (2012)

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Journal Article

Lemak, S.; Tchigvintsev, A.; Petit, P.; Flick, R.; Singer, A. U.; Brown, G.; Evdokimova, E.; Egorova, O.; Gonzalez, C. F.; Chernikova, T. N. et al.; Yakimov, M. M.; Kube, M.; Reinhardt, R.; Golyshin, P. N.; Savchenko, A.; Yakunin, A. F.: Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica. Biochemical Journal 445, pp. 193 - 203 (2012)

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Journal Article

Lenk, S.; Moraru, C.; Hahnke, S.; Arnds, J.; Richter, M.; Kube, M.; Reinhardt, R.; Brinkhoff, T.; Harder, J.; Amann, R. et al.; Mussmann, M.: Roseobacter clade bacteria are abundant in coastal sediments and encode a novel combination of sulfur oxidation genes. ISME JOURNAL 6 (12), pp. 2178 - 2187 (2012)

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Journal Article

Madhugiri, R.; Pessi, G.; Voss, B.; Hahn, J.; Sharma, C. M.; Reinhardt, R.; Vogel, J.; Hess, W. R.; Fischer, H.-M.; Evguenieva-Hackenberg, E.: Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis. RNA BIOLOGY 9 (1), pp. 47 - 58 (2012)

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Journal Article

O'Connell, R. J.; Thon, M. R.; Hacquard, S.; Amyotte, S. G.; Kleemann, J.; Torres, M. F.; Damm, U.; Buiate, E. A.; Epstein, L.; Alkan, N. et al.; Altmueller, J.; Alvarado-Balderrama, L.; Bauser, C. A.; Becker, C.; Birren, B. W.; Chen, Z.; Choi, J.; Crouch, J. A.; Duvick, J. P.; Farman, M. A.; Gan, P.; Heiman, D.; Henrissat, B.; Howard, R. J.; Kabbage, M.; Koch, C.; Kracher, B.; Kubo, Y.; Law, A. D.; Lebrun, M.-H.; Lee, Y.-H.; Miyara, I.; Moore, N.; Neumann, U.; Nordstroem, K.; Panaccione, D. G.; Panstruga, R.; Place, M.; Proctor, R. H.; Prusky, D.; Rech, G.; Reinhardt, R.; Rollins, J. A.; Rounsley, S.; Schardl, C. L.; Schwartz, D. C.; Shenoy, N.; Shirasu, K.; Sikhakolli, U. R.; Stueber, K.; Sukno, S. A.; Sweigard, J. A.; Takano, Y.; Takahara, H.; Trail, F.; van der Does, H. C.; Voll, L. M.; Will, I.; Young, S.; Zeng, Q.; Zhang, J.; Zhou, S.; Dickman, M. B.; Schulze-Lefert, P.; Ver Loren van Themaat, E.; Ma, L.-J.; Vaillancourt, L. J.: Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nature Genetics 44 (9), pp. 1060 - + (2012)

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Journal Article

Panizzi, J. R.; Becker-Heck, A.; Castleman, V. H.; Al-Mutairi, D. A.; Liu, Y.; Loges, N. T.; Pathak, N.; Austin-Tse, C.; Sheridan, E.; Schmidts, M. et al.; Olbrich, H.; Werner, C.; Haeffner, K.; Hellman, N.; Chodhari, R.; Gupta, A.; Kramer-Zucker, A.; Olale, F.; Burdine, R. D.; Schier, A. F.; O'Callaghan, C.; Chung, E. M. K.; Reinhardt, R.; Mitchison, H. M.; King, S. M.; Omran, H.; Drummond, I. A.: CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms. Nature Genetics 44 (6), pp. 714 - U148 (2012)

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Journal Article

Rieder, R.; Reinhardt, R.; Sharma, C. M.; Vogel, J.: Experimental tools to identify RNA-protein interactions in Helicobacter pylori. RNA Biology 9 (4), pp. 520 - 531 (2012)

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Journal Article

Rubelt, F.; Sievert, V.; Knaust, F.; Diener, C.; Lim, T. S.; Skriner, K.; Klipp, E.; Reinhardt, R.; Lehrach, H.; Konthur, Z.: Onset of Immune Senescence Defined by Unbiased Pyrosequencing of Human Immunoglobulin mRNA Repertoires. PLoS One 7 (11), e49774 (2012)

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Journal Article

Tine, M.; Kuhl, H.; Jastroch, M.; Reinhardt, R.: Genomic characterization of the European sea bass Dicentrarchus labrax reveals the presence of a novel uncoupling protein (UCP) gene family member in the teleost fish lineage. BMC Biology 12, 62 (2012)

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Journal Article

Trautwein, K.; Lahme, S.; Woehlbrand, L.; Feenders, C.; Mangelsdorf, K.; Harder, J.; Steinbuechel, A.; Blasius, B.; Reinhardt, R.; Rabus, R.: Physiological and Proteomic Adaptation of "Aromatoleum aromaticum" EbN1 to Low Growth Rates in Benzoate-Limited, Anoxic Chemostats. Journal of Bacteriology (Washington, DC) 194 (9), pp. 2165 - 2180 (2012)

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Journal Article

Wessling, R.; Schmidt, S. M.; Micali, C.; Knaust, F.; Reinhardt, R.; Neumann, U.; Ver Loren van Themaat, E.; Panstruga, R.: Transcriptome analysis of enriched Golovinomyces orontii haustoria by deep 454 pyrosequencing. Fungal Genetics and Biology 49 (6), pp. 470 - 482 (2012)

MPG.PuRe

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2011

Journal Article

Averdam, A.; Kuschal, C.; Otto, N.; Westphal, N.; Roos, C.; Reinhardt, R.; Walter, L.: Sequence analysis of the grey mouse lemur (Microcebus murinus) MHC class II DQ and DR region. Immunogenetics 63 (2), pp. 85 - 93 (2011)

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Journal Article

Becker-Heck, A.; Zohn, I. E.; Okabe, N.; Pollock, A.; Lenhart, K. B.; Sullivan-Brown, J.; McSheene, J.; Loges, N. T.; Olbrich, H.; Haeffner, K. et al.; Fliegauf, M.; Horvath, J.; Reinhardt, R.; Nielsen, K. G.; Marthin, J. K.; Baktai, G.; Anderson, K. V.; Geisler, R.; Niswander, L.; Omran, H.; Burdine, R. D.: The coiled-coil domain containing protein CCDC40 is essential for motile cilia function and left-right axis formation. Nature Genetics 43 (1), pp. 79 - 84 (2011)

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Journal Article

De Gregoris, T. B.; Rupp, O.; Klages, S.; Knaust, F.; Bekel, T.; Kube, M.; Burgess, J. G.; Arnone, M. I.; Goesmann, A.; Reinhardt, R. et al.; Clare, A. S.: Deep sequencing of naupliar-, cyprid- and adult-specific normalised Expressed Sequence Tag (EST) libraries of the acorn barnacle Balanus amphitrite. Biofouling 27 (4), pp. 367 - 374 (2011)

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Journal Article

Jones, A. C.; Monroe, E. A.; Podell, S.; Hess, W. R.; Klages, S.; Esquenazi, E.; Niessen, S.; Hoover, H.; Rothmann, M.; Lasken, R. S. et al.; Yates, J. R.; Reinhardt, R.; Kube, M.; Burkart, M. D.; Allen, E. E.; Dorrestein, P. C.; Gerwick, W. H.; Gerwick, L.: Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proceedings of the National Academy of Sciences of the United States of America 108 (21), pp. 8815 - 8820 (2011)

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Journal Article

Kennemann, L.; Didelot, X.; Aebischer, T.; Kuhn, S.; Drescher, B.; Droege, M.; Reinhardt, R.; Correa, P.; Meyer, T. F.; Josenhans, C. et al.; Falush, D.; Suerbaum, S.: Helicobacter pylori genome evolution during human infection. Proceedings of the National Academy of Sciences of the United States of America 108 (12), pp. 5033 - 5038 (2011)

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Journal Article

Kuhl, H.; Tine, M.; Beck, A.; Timmermann, B.; Kodira, C.; Reinhardt, R.: Directed sequencing and annotation of three Dicentrarchus labrax L. chromosomes by applying Sanger- and pyrosequencing technologies on pooled DNA of comparatively mapped BAC clones. GENOMICS 98 (3), pp. 202 - 212 (2011)

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Journal Article

Schulte, L. N.; Eulalio, A.; Mollenkopf, H. J.; Reinhardt, R.; Vogel, J.: Analysis of the host microRNA response to Salmonella uncovers the control of major cytokines by the let-7 family. EMBO Journal 30 (10), pp. 1977 - 1989 (2011)

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Journal Article

Stolle, E.; Wilfert, L.; Schmid-Hempel, R.; Schmid-Hempel, P.; Kube, M.; Reinhardt, R.; Moritz, R. F. A.: A second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the Apidae. BMC Genomics 12, 48 (2011)

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publisher-version

Journal Article

Tine, M.; Kuhl, H.; Beck, A.; Bargelloni, L.; Reinhardt, R.: Comparative analysis of intronless genes in teleost fish genomes: Insights into their evolution and molecular function. Marine Genomics 4 (2), pp. 109 - 119 (2011)

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Journal Article

Waldmueller, S.; Erdmann, J.; Binner, P.; Gelbrich, G.; Pankuweit, S.; Geier, C.; Timmermann, B.; Haremza, J.; Perrot, A.; Scheer, S. et al.; Wachter, R.; Schulze-Waltrup, N.; Dermintzoglou, A.; Schoenberger, J.; Zeh, W.; Jurmann, B.; Brodherr, T.; Boergel, J.; Farr, M.; Milting, H.; Blankenfeldt, W.; Reinhardt, R.; Oezcelik, C.; Osterziel, K.-J.; Loeffler, M.; Maisch, B.; Regitz-Zagrosek, V.; Schunkert, H.; Scheffold, T.: Novel correlations between the genotype and the phenotype of hypertrophic and dilated cardiomyopathy: results from the German Competence Network Heart Failure. EUROPEAN JOURNAL OF HEART FAILURE 13 (11), pp. 1185 - 1192 (2011)

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Zedelius, J.; Rabus, R.; Grundmann, O.; Werner, I.; Brodkorb, D.; Schreiber, F.; Ehrenreich, P.; Behrends, A.; Wilkes, H.; Kube, M. et al.; Reinhardt, R.; Widdel, F.: Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation. ENVIRONMENTAL MICROBIOLOGY REPORTS 3 (1), pp. 125 - 135 (2011)

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2010

Journal Article

Spanu, P. D.; Abbott, J. C.; Amselem, J. l.; Burgis, T. A.; Soanes, D. M.; Stueber, K.; Ver Loren van Themaat, E.; Brown, J. K. M.; Butcher, S. A.; Gurr, S. J. et al.; Lebrun, M.-H.; Ridout, C. J.; Schulze-Lefert, P.; Talbot, N. J.; Ahmadinejad, N.; Ametz, C.; Barton, G. R.; Benjdia, M.; Bidzinski, P.; Bindschedler, L. V.; Both, M.; Brewer, M. T.; Cadle-Davidson, L.; Cadle-Davidson, M. M.; Collemare, J.; Cramer, R.; Francisco, L.-R.; Frenkel, O.; Godfrey, D.; Harriman, J.; Hoede, C.; King, B. C.; Klages, S.; Kleemann, J.; Knoll, D.; Koti, P. S.; Kreplak, J.; Lu, X.; Maekawa, T.; Mahanil, S.; Milgroom, M. G.; Montana, G.; Noir, S.; O'Connell, R. J.; Oberhaensli, S.; Parlange, F.; Pedersen, C.; Quesneville, H.; Reinhardt, R.; Rott, M.; Sacristán, S.; Schmidt, S. M.; Schön, M.; Skamnioti, P.; Sommer, H.; Stephens, A.; Takahara, H.; Thordal-Christensen, H.; Vigouroux, M.; Weßling, R.; Wicker, T.; Panstruga, R.: Genome expansion and gene loss in powdery mildew fungi reveal functional tradeoffs in extreme parasitism. Science 330, pp. 1543 - 1546 (2010)

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Publications of R. Reinhardt

Journal Article (88)